SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000225950
Gene: NTF4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:49061066-49065054 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_093000443 chr19:48859471-48890625 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 443 15 1051 138 3 89 1963 PLEKHA4,PPP1R15A,TULP2,NUCB1,HSD17B14,DHDH,BCAT2,NUCB1-AS1,FTL,BAX,LHB,RASIP1,IZUMO1,RUVBL2,NTF4
SE_02_098901512 chr19:48957080-48979771 Sample_02_0989 Kidney kidney cortex_WT 1512 6 695 33 2 87 1676 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,LOC101059948,PPFIA3,NTF4,NUCB1,PPP1R15A,RASIP1,IZUMO1
SE_02_047700874 chr19:48960534-48966600 Sample_02_0477 Colon intestinal epithelial organoids_139a 874 2 169 7 1 41 584 BAX,FTL,DHDH,MIR6798,GYS1,RUVBL2,NUCB1-AS1,CGB,LHB,BCAT2,SNRNP70,HRC,TULP2,PPFIA3,NTF4,NUCB1,PPP1R15A,TRPM4,C19orf73,IZUMO1
SE_04_000900304 chr19:48960585-48980085 Sample_04_0009 Lung A549 304 2 601 22 2 87 1604 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,LOC101059948,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_01_010400501 chr19:48961177-48980068 Sample_01_0104 Lung upper lobe of left lung 501 5 586 22 2 83 1476 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,LOC101059948,PLEKHA4,BCAT2,SNRNP70,NTF4,NUCB1,PPP1R15A,CGB7,NTN5,IZUMO1
SE_04_000500125 chr19:48961268-48968873 Sample_04_0005 Lung A549 FOXA2 overexpressed 125 1 197 10 1 49 693 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,RUVBL2,CGB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_04_001000447 chr19:48961421-48980053 Sample_04_0010 Lung A549 TGFb 447 2 578 22 2 83 1433 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,LOC101059948,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_02_152300502 chr19:48961636-48967782 Sample_02_1523 Lung A549 DMSO 502 2 165 8 1 35 436 BAX,FTL,DHDH,LHB,NUCB1-AS1,MIR6798,GYS1,RUVBL2,CGB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_04_000600157 chr19:48961775-48968230 Sample_04_0006 Lung A549 GFP control 157 1 170 9 1 33 456 BAX,FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,RUVBL2,CGB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_04_000800304 chr19:48961815-48965100 Sample_04_0008 Lung A549 shRNA control 304 1 87 5 1 4 45 DHDH,BAX,MIR6798,GYS1,RUVBL2,NUCB1-AS1,FTL,CGB,LHB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_02_151400648 chr19:48961855-48980195 Sample_02_1514 Lung Differentiated AT1-like cells 648 4 567 20 2 69 1329 FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,BAX,LOC101059948,PLEKHA4,BCAT2,SNRNP70,NTF4,NUCB1,PPP1R15A,CGB7,NTN5,IZUMO1
SE_04_000300282 chr19:48961972-48965065 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 282 1 80 4 1 4 0 DHDH,BAX,MIR6798,GYS1,RUVBL2,NUCB1-AS1,FTL,CGB,LHB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_04_000700206 chr19:48962026-48967630 Sample_04_0007 Lung A549 FOXA2 shRNA2 206 2 147 6 1 32 349 FTL,DHDH,LHB,NUCB1-AS1,MIR6798,GYS1,RUVBL2,BAX,CGB,PLEKHA4,NTF4,NUCB1,CGB7,IZUMO1
SE_02_151200273 chr19:48962035-48979494 Sample_02_1512 Lung Purified AT2 cells 273 3 541 19 2 69 1294 FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,BAX,LOC101059948,PLEKHA4,BCAT2,SNRNP70,NTF4,NUCB1,PPP1R15A,CGB7,NTN5,IZUMO1
SE_02_153300269 chr19:48962035-48979618 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 269 3 545 19 2 69 1294 FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,CGB,RUVBL2,BAX,LOC101059948,PLEKHA4,BCAT2,SNRNP70,NTF4,NUCB1,PPP1R15A,CGB7,NTN5,IZUMO1
SE_02_094100412 chr19:48962175-48968936 Sample_02_0941 Brain T98G 412 2 171 7 1 35 543 FTL,GYS1,DHDH,LHB,NUCB1-AS1,MIR6798,RUVBL2,BAX,CGB,PLEKHA4,BCAT2,PPFIA3,NTF4,NUCB1,PPP1R15A,HSD17B14,C19orf73,CGB7
SE_01_011500871 chr19:48977836-48993259 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 871 4 488 15 1 60 906 GYS1,CGB2,DHDH,LHB,BAX,CGB1,MIR6798,CGB,FTL,RUVBL2,SNAR-G1,LOC101059948,SNAR-G2,PPP1R15A,TULP2,NUCB1,KCNA7,TRPM4,CGB7,NTF4,HRC
Genomic distribution of SEs associated with NTF4
Genome Browser

The strength of the tissue affected by the gene

Expression of NTF4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)