SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000158864
Gene: NDUFS2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:161197104-161214723 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_004900642 chr1:160997616-161019401 Sample_00_0049 Small intestine small intestine 30y 642 9 577 75 0 46 646 F11R,TSTD1,USF1,ITLN2,DEDD,PCP4L1,NIT1,ARHGAP30,LY9,NDUFS2,NR1I3,PFDN2,UFC1,ITLN1,PVRL4
SE_02_130800232 chr1:161011937-161021605 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 232 1 229 23 0 29 155 F11R,TSTD1,USF1,ARHGAP30,DEDD,NDUFS2,NIT1,PFDN2,USP21,UFC1,KLHDC9
SE_02_130900363 chr1:161012049-161021568 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 363 4 223 23 0 29 153 F11R,TSTD1,USF1,ARHGAP30,DEDD,NDUFS2,NIT1,PFDN2,USP21,UFC1,KLHDC9
SE_02_087500603 chr1:161041023-161085445 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 603 23 1169 113 8 426 3131 PVRL4,USF1,ARHGAP30,DEDD,KLHDC9,NIT1,TSTD1,PFDN2,F11R,PPOX,NDUFS2,B4GALT3,USP21,CD244
SE_02_062000100 chr1:161182078-161207292 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 100 4 630 42 3 198 1819 NDUFS2,ADAMTS4,FCER1G,DEDD,MIR5187,TOMM40L,PPOX,USP21,UFC1,APOA2,NR1I3,B4GALT3,SDHC
SE_02_120400553 chr1:161184781-161203141 Sample_02_1204 Brain NB2 553 6 454 33 3 173 1634 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,TOMM40L,NR1I3,PPOX,USP21,UFC1,APOA2,CFAP126,DEDD,PCP4L1,ARHGAP30,PFDN2,KLHDC9
SE_02_120500546 chr1:161185472-161209830 Sample_02_1205 Brain NB3 546 11 622 41 4 200 1956 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,PPOX,TOMM40L,PCP4L1,USP21,UFC1,APOA2,NR1I3,CFAP126,DEDD,ARHGAP30,PFDN2,KLHDC9
SE_02_112800491 chr1:161185732-161206899 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 491 4 536 35 3 185 1819 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,TOMM40L,NR1I3,PPOX,USP21,UFC1,APOA2,MPZ,DEDD,PCP4L1,SDHC
SE_02_046500643 chr1:161192648-161203139 Sample_02_0465 Adipose subcutaneous adipocytes 643 1 267 17 2 123 1163 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,TOMM40L,NR1I3,PPOX,USP21,UFC1,APOA2,MPZ,DEDD,PCP4L1,SDHC
SE_01_011500965 chr1:161196524-161203145 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 965 1 170 15 2 86 635 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,TOMM40L,NR1I3,PPOX,USP21,UFC1,APOA2,DEDD,PCP4L1,NIT1,SDHC,KLHDC9
SE_02_089500448 chr1:161197053-161208244 Sample_02_0895 Heart left ventricle_LV1259 448 5 292 19 2 102 709 NDUFS2,ADAMTS4,FCER1G,B4GALT3,MIR5187,TOMM40L,NR1I3,PPOX,USP21,UFC1,APOA2,PCP4L1,PFDN2,KLHDC9
SE_00_005200811 chr1:161199165-161217920 Sample_00_0052 Heart left ventricle 3y 811 4 504 38 4 109 1147 FCER1G,NDUFS2,B4GALT3,MIR5187,PPOX,TOMM40L,PCP4L1,USP21,UFC1,APOA2,NR1I3,ADAMTS4,PFDN2,KLHDC9
SE_02_046501441 chr1:161382355-161400459 Sample_02_0465 Adipose subcutaneous adipocytes 1441 6 449 62 1 0 94 CFAP126,MPZ,SDHC,NDUFS2,FCGR2A
SE_00_005500749 chr1:161386253-161400611 Sample_00_0055 Spleen spleen 34y 749 4 357 45 1 0 94 CFAP126,NDUFS2,B4GALT3,TOMM40L,SDHC,FCGR2A
SE_02_068300416 chr1:161389100-161400557 Sample_02_0683 Lung DMS114 416 3 281 33 1 0 94 CFAP126,NDUFS2,NIT1,USF1,USP21,UFC1
Genomic distribution of SEs associated with NDUFS2
Genome Browser

The strength of the tissue affected by the gene

Expression of NDUFS2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)