SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000205362
Gene: MT1A Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:56638666-56640087 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120501190 chr16:56504788-56521122 Sample_02_1205 Brain NB3 1190 7 421 35 2 37 377 BBS2,MT4,AMFR,MT1A,MT2A,NUDT21
SE_02_120400951 chr16:56510170-56521170 Sample_02_1204 Brain NB2 951 2 303 24 1 25 298 BBS2,MT4,AMFR,MT1A,MT2A,NUDT21
SE_02_100400088 chr16:56539693-56552621 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 88 5 432 85 0 15 0 MT4,BBS2,MT3,NUP93,MT1A,MT1F,MT2A,NUDT21
SE_02_094901047 chr16:56603625-56615498 Sample_02_0949 Umbilical artery HUAEC_WT 1047 9 339 39 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,AMFR,MT1G,MT1H,OGFOD1,BBS2
SE_02_088700429 chr16:56603862-56622279 Sample_02_0887 Heart left ventricle_LV1121 429 5 574 74 1 32 491 MT2A,MT1L,MT4,MT1G,MT1DP,MT1F,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,MT1H
SE_02_076900286 chr16:56603943-56619500 Sample_02_0769 Ovary HEYA8 286 4 466 58 1 32 491 MT2A,MT1L,MT4,MT1G,MT1DP,MT1F,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,MT1H,MT1X,BBS2
SE_02_077101259 chr16:56605296-56615427 Sample_02_0771 Ovary OVCA429_shGRHL2 1259 7 289 35 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,MT1G,MT1H,MT1X,BBS2
SE_01_011700070 chr16:56605565-56615181 Sample_01_0117 Lung fibroblast of lung 70 3 276 32 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,AMFR,MT1G,MT1H,MT1X,NUDT21,NUP93,BBS2
SE_02_112900645 chr16:56605656-56612604 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 645 2 199 22 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,AMFR,MT1G,MT1H,MT1X,NUDT21,OGFOD1,BBS2
SE_02_072300410 chr16:56605668-56612915 Sample_02_0723 Pancreas MIAPaca2 WT 410 1 211 23 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,AMFR,MT1G,MT1H,MT1X,NUDT21,ARL2BP,OGFOD1
SE_02_112800450 chr16:56605681-56621580 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 450 4 500 65 1 32 491 MT2A,MT1L,MT4,MT1G,MT1DP,MT1F,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,MT1H,AMFR,MT1X,NUDT21,OGFOD1,BBS2
SE_02_043700427 chr16:56606196-56615242 Sample_02_0437 Bone 143B 427 5 261 26 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M
SE_02_112700140 chr16:56606331-56611509 Sample_02_1127 Adipose visceral adipose_CTL_H465 140 3 158 15 0 21 230 MT2A,MT4,MT1L,MT1F,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,AMFR,MT1G,MT1H,MT1X,NUDT21,OGFOD1,BBS2
SE_02_076600779 chr16:56608581-56618953 Sample_02_0766 Ovary PEO1 779 1 314 41 1 29 433 MT2A,MT1L,MT4,MT1G,MT1DP,MT1F,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M,MT1H,MT1X,BBS2
Genomic distribution of SEs associated with MT1A
Genome Browser

The strength of the tissue affected by the gene

Expression of MT1A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)