SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID:
Gene: LRRC48 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_047700115 chr17:17667651-17754008 Sample_02_0477 Colon intestinal epithelial organoids_139a 115 22 2241 143 1 328 331 SMCR2,RAI1,SMCR5,RAI1-AS1,LRRC48,TOM1L2,SREBF1,PEMT,RASD1
SE_02_088200246 chr17:17681442-17753763 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 246 13 1910 128 1 301 285 RAI1,SMCR2,SMCR5,RAI1-AS1,LRRC48,SREBF1,PEMT,RASD1,MIEF2
SE_02_087800374 chr17:17681455-17753617 Sample_02_0878 Ovary SVOG3e cells_noDox_control 374 16 1907 128 1 301 284 RAI1,SMCR2,SMCR5,RAI1-AS1,LRRC48,SREBF1,PEMT,RASD1,MIEF2
SE_02_088300205 chr17:17681484-17753861 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 205 12 1912 128 1 301 274 RAI1,SMCR2,SMCR5,RAI1-AS1,LRRC48,SREBF1,PEMT,RASD1,MIEF2
SE_02_088100289 chr17:17682262-17753214 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 289 13 1880 126 1 279 121 RAI1,SMCR2,SMCR5,RAI1-AS1,LRRC48,SREBF1,PEMT,RASD1,MIEF2
SE_01_009900090 chr17:17817738-17850123 Sample_01_0099 Colon transverse colon 90 6 843 84 6 101 2031 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_151400241 chr17:17818526-17863425 Sample_02_1514 Lung Differentiated AT1-like cells 241 10 1186 105 5 136 2194 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,GID4,RAI1
SE_02_047800199 chr17:17818764-17846723 Sample_02_0478 Colon normal colon mucosa 199 16 702 71 3 84 1491 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_122500331 chr17:17818824-17850182 Sample_02_1225 Bone marrow RAJI 331 16 804 79 5 93 1849 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,RAI1
SE_02_153200132 chr17:17819297-17873756 Sample_02_1532 Mammary gland MCF10A 132 10 1426 126 5 159 2376 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_093500141 chr17:17819335-17861346 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 141 24 1109 103 5 121 1910 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,RAI1
SE_02_072500065 chr17:17819365-17850215 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 65 12 787 79 5 84 1741 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_094100168 chr17:17820016-17850068 Sample_02_0941 Brain T98G 168 8 767 79 5 82 1605 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,DRG2,MED9,ATPAF2
SE_02_062200633 chr17:17821224-17852685 Sample_02_0622 Blood EOL1_Naive 633 16 823 86 5 81 1475 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,GID4,RAI1
SE_02_046100172 chr17:17821225-17851113 Sample_02_0461 Blood MV-4-11-B cells 172 11 777 80 5 78 1470 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_100000144 chr17:17821603-17842358 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 144 10 493 55 2 45 312 SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1,ATPAF2
SE_02_060200627 chr17:17821810-17843596 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 627 7 509 57 2 46 369 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_059600471 chr17:17821913-17843712 Sample_02_0596 Mammary gland MCF10A_ DMSO 471 4 509 57 2 46 385 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_094901140 chr17:17822040-17850031 Sample_02_0949 Umbilical artery HUAEC_WT 1140 12 715 76 5 71 1390 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,RAI1
SE_02_060300683 chr17:17822387-17843087 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 683 9 496 55 2 44 312 SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_093801207 chr17:17823788-17841482 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1207 5 440 49 2 31 180 SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1
SE_02_092901037 chr17:17823820-17850053 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1037 7 686 72 5 59 1252 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48
SE_02_151300445 chr17:17823913-17861494 Sample_02_1513 Lung Transitional AT2->1 cells 445 5 1011 96 5 95 1448 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,GID4,RAI1
SE_02_108200357 chr17:17833022-17843861 Sample_02_1082 Retina retina 357 1 243 28 1 28 271 TOM1L2,SREBF1,MIR6777,MIR33B,LRRC48
SE_02_098901095 chr17:17833593-17843057 Sample_02_0989 Kidney kidney cortex_WT 1095 1 216 24 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1,PEMT
SE_02_066000130 chr17:17833611-17844669 Sample_02_0660 Mammary gland MCF10DCIS 130 1 262 30 2 30 464 TOM1L2,SREBF1,MIR6777,MIR33B,LRRC48
SE_02_058400185 chr17:17833656-17841666 Sample_02_0584 Lung H1299 WT 185 1 188 21 1 25 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1
SE_01_010900443 chr17:17834080-17841937 Sample_01_0109 Colon transverse colon_54y 443 1 173 18 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48
SE_02_120501044 chr17:17834935-17842328 Sample_02_1205 Brain NB3 1044 1 158 18 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,GID4,RAI1
SE_02_120400679 chr17:17835106-17842507 Sample_02_1204 Brain NB2 679 1 162 18 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,GID4,RAI1
SE_02_093700496 chr17:17835122-17842609 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 496 1 165 18 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1
SE_01_010400655 chr17:17835649-17842948 Sample_01_0104 Lung upper lobe of left lung 655 1 155 18 1 27 174 SREBF1,MIR6777,MIR33B,LRRC48,GID4,RAI1
SE_01_010500704 chr17:17836301-17841815 Sample_01_0105 Thyroid gland thyroid gland_54y 704 1 113 14 1 25 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,GID4,RAI1,ATPAF2
SE_02_072600582 chr17:17838808-17849989 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 582 4 302 29 4 41 1078 TOM1L2,MIR6777,MIR33B,SREBF1,LRRC48
SE_02_100500151 chr17:17839759-17856486 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 151 6 465 37 3 59 1163 TOM1L2,MIR6777,MIR33B,SREBF1,LRRC48,RAI1,ATPAF2
SE_01_010000047 chr17:17839813-17852507 Sample_01_0100 Thyroid gland thyroid gland_37y 47 6 359 34 3 50 1163 TOM1L2,MIR6777,MIR33B,SREBF1,LRRC48,GID4,RAI1,ATPAF2
SE_02_047700218 chr17:17892205-17961665 Sample_02_0477 Colon intestinal epithelial organoids_139a 218 27 1701 164 2 208 214 TOM1L2,LRRC48
SE_01_011500180 chr17:17899825-17944477 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 180 17 1077 102 2 131 75 TOM1L2,LRRC48,SREBF1,ATPAF2
SE_01_011200570 chr17:17912582-17923784 Sample_01_0112 Embryonic kidney HEK293_encode 570 4 252 24 1 29 0 TOM1L2,LRRC48
Genomic distribution of SEs associated with LRRC48
Genome Browser

The strength of the tissue affected by the gene

Expression of LRRC48

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)