SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000135363
Gene: LMO2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:33858576-33892076 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062000009 chr11:33689240-33736411 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 9 23 1302 135 7 73 1697 CD59,C11ORF91,FBXO3-AS1,FBXO3,LMO2,C11orf91
SE_02_062100188 chr11:33689707-33692308 Sample_02_0621 Aortic Aortic Endothelial Cells_UF 188 3 87 2 0 2 0 C11ORF91,CD59,LMO2,C11orf91
SE_04_000200795 chr11:33858103-33913081 Sample_04_0002 Blood cold shocked K562 795 8 1422 42 6 401 825 LMO2,AC132216.1
SE_02_122900026 chr11:33859315-33970446 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 26 46 2919 50 6 626 727 LMO2,CAPRIN1,AC132216.1
SE_04_000100303 chr11:33863594-33913658 Sample_04_0001 Blood heat shocked K562 303 8 1289 40 5 319 659 LMO2,AC132216.1
SE_02_084100060 chr11:33866563-33987117 Sample_02_0841 Blood THP-1_untr 60 34 3172 49 3 555 483 LMO2
SE_02_109900163 chr11:33866943-33912931 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 163 22 1150 34 2 292 483 LMO2,AC132216.1
SE_02_054500356 chr11:33867450-33913596 Sample_02_0545 Bone marrow K562 WT 356 9 1167 35 2 297 483 LMO2,AC132216.1
SE_02_098700538 chr11:33871627-33912927 Sample_02_0987 Blood K562_Control_1 538 8 1030 33 2 210 205 LMO2,AC132216.1
SE_02_098800619 chr11:33880396-33912899 Sample_02_0988 Blood K562_EPZ 619 9 812 30 2 172 205 LMO2,AC132216.1
SE_02_062200120 chr11:33890208-33944079 Sample_02_0622 Blood EOL1_Naive 120 33 1399 21 0 315 153 LMO2
SE_02_098700373 chr11:33926482-33953542 Sample_02_0987 Blood K562_Control_1 373 11 722 5 0 139 0 LMO2,CAPRIN1,AC132216.1
SE_02_054500281 chr11:33926877-33954576 Sample_02_0545 Bone marrow K562 WT 281 11 744 5 0 145 0 LMO2,CAPRIN1,AC132216.1
SE_02_111600445 chr11:33926888-33953518 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 445 9 715 5 0 139 0 LMO2,CAPRIN1,AC132216.1
SE_04_000100370 chr11:33926952-33971637 Sample_04_0001 Blood heat shocked K562 370 9 1203 6 0 210 0 LMO2,CAPRIN1,AC132216.1
SE_02_109900194 chr11:33927025-33970442 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 194 17 1169 6 0 210 0 LMO2,CAPRIN1,AC132216.1
SE_02_142300241 chr11:33927237-33944640 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 241 6 500 4 0 124 0 LMO2,CAPRIN1,AC132216.1
SE_02_113000507 chr11:33932571-33953330 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 507 7 533 4 0 89 0 LMO2,CAPRIN1,AC132216.1
SE_02_098800367 chr11:33935276-33960370 Sample_02_0988 Blood K562_EPZ 367 11 669 2 0 111 0 LMO2,CAPRIN1,AC132216.1
SE_02_142200169 chr11:33936020-33946224 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 169 5 282 2 0 55 0 LMO2,CAPRIN1,AC132216.1
SE_02_054700418 chr11:33936849-33948147 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 418 7 299 2 0 53 0 LMO2,CAPRIN1,AC132216.1
SE_02_109900813 chr11:34033775-34054769 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 813 5 598 50 1 76 445 CAPRIN1,LMO2,NAT10
SE_02_054500688 chr11:34033792-34054851 Sample_02_0545 Bone marrow K562 WT 688 4 600 50 1 76 445 CAPRIN1,LMO2,NAT10
SE_02_098700690 chr11:34033957-34054259 Sample_02_0987 Blood K562_Control_1 690 4 579 48 1 76 445 CAPRIN1,LMO2,NAT10
SE_04_000101064 chr11:34037403-34056180 Sample_04_0001 Blood heat shocked K562 1064 3 542 47 1 63 445 CAPRIN1,NAT10,LMO2
SE_02_122900687 chr11:34042184-34084365 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 687 18 1273 129 1 89 601 CAPRIN1,NAT10,LMO2
SE_02_111600500 chr11:34043983-34055659 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 500 5 360 31 1 63 445 CAPRIN1,NAT10,LMO2
SE_04_000200678 chr11:34043998-34055847 Sample_04_0002 Blood cold shocked K562 678 2 363 31 1 63 445 CAPRIN1,NAT10,LMO2
SE_02_103300492 chr11:34044160-34063301 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 492 4 582 49 1 68 445 CAPRIN1,NAT10,LMO2
SE_02_113000623 chr11:34044320-34054230 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 623 3 304 28 1 63 445 CAPRIN1,LMO2,NAT10
SE_02_054700289 chr11:34044636-34053765 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 289 2 277 27 1 63 445 CAPRIN1,LMO2,NAT10
Genomic distribution of SEs associated with LMO2
Genome Browser

The strength of the tissue affected by the gene

Expression of LMO2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)