SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000143768
Gene: LEFTY2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:225936598-225941383 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010400800 chr1:225834626-225883584 Sample_01_0104 Lung upper lobe of left lung 800 9 1445 183 8 175 3121 EPHX1,TMEM63A,PYCR2,LEFTY1,MIR6741,LEFTY2
SE_02_122900643 chr1:225915737-225937470 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 643 19 583 46 1 62 928 PYCR2,LEFTY2,MIR6741,TMEM63A,LEFTY1,SDE2
SE_02_113000563 chr1:225924425-225945086 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 563 4 513 38 0 59 739 LEFTY2,TMEM63A,LEFTY1,MIR6741,PYCR2,SDE2,RP4-559A3.7
SE_02_092800183 chr1:226025309-226037229 Sample_02_0928 Peripheral blood neutrophils_Ecoli 183 1 272 28 0 23 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_092700238 chr1:226026342-226037367 Sample_02_0927 Peripheral blood neutrophils_US 238 1 225 22 0 23 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_153000374 chr1:226026888-226039047 Sample_02_1530 Peripheral blood neutrophils_0BA0X 374 1 253 23 0 22 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_153100111 chr1:226027283-226065516 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 111 12 895 80 2 110 208 H3F3AP4,H3F3A,SDE2,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_152900360 chr1:226027959-226037440 Sample_02_1529 Peripheral blood neutrophils_0BC75 360 1 188 20 0 7 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_101701627 chr1:226108684-226136226 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1627 7 700 53 2 20 0 H3F3A,H3F3AP4,LEFTY2,MIXL1
Genomic distribution of SEs associated with LEFTY2
Genome Browser

The strength of the tissue affected by the gene

Expression of LEFTY2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)