SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000213658
Gene: LAT Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:28984826-28990784 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122900270 chr16:28976608-29031742 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 270 45 1437 111 2 121 2154 LAT,SPNS1,CD19,NFATC2IP,MIR4517,RRN3P2,RABEP2
SE_04_000101166 chr16:28991355-29032034 Sample_04_0001 Blood heat shocked K562 1166 8 1042 81 1 16 0 NFATC2IP,MIR4517,SPNS1,LAT,RRN3P2,CD19,RABEP2
SE_02_109900481 chr16:29004403-29029652 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 481 11 614 43 1 16 0 LAT,MIR4517,SPNS1,RRN3P2,NFATC2IP,CD19,RABEP2
SE_02_054501141 chr16:29004841-29013965 Sample_02_0545 Bone marrow K562 WT 1141 4 242 20 0 16 0 MIR4517,LAT,SPNS1,NFATC2IP,RABEP2
SE_00_004500314 chr16:29007745-29030990 Sample_00_0045 Thymus thymus 314 8 569 38 1 16 0 RRN3P2,LAT,SPNS1,CD19,CTB-134H23.2,NFATC2IP,RABEP2
Genomic distribution of SEs associated with LAT
Genome Browser

The strength of the tissue affected by the gene

Expression of LAT

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)