SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000186832
Gene: KRT16 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:41609778-41615899 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111500255 chr17:41615074-41679888 Sample_02_1115 Liver HepG2 255 16 1941 161 1 238 2299 KRT17,KRT42P,GAST,EIF1,KRT16,KRT9,KRT14
SE_01_003600280 chr17:41623175-41657600 Sample_01_0036 Cervix HeLa-S3 280 5 1029 60 0 153 1642 KRT17,KRT42P,EIF1,KRT14,KRT16,GAST,KRT15,KRT19
SE_01_010700051 chr17:41642208-41697478 Sample_01_0107 Esophagus esophagus squamous epithelium 51 9 1573 152 2 117 400 EIF1,HAP1,GAST,KRT17,KRT42P,KRT16,KRT19,KRT15,KRT9,JUP,KRT13
SE_00_001100060 chr17:41642235-41679635 Sample_00_0011 Esophagus esophagus 60 5 1043 120 1 54 0 GAST,EIF1,KRT17,KRT16,KRT42P,KRT15,KRT19,KRT9
SE_02_094700048 chr17:41645251-41679762 Sample_02_0947 Tongue Cal27 48 9 979 119 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,KRT15,KRT32,KRT36,NT5C3B
SE_02_048000075 chr17:41645313-41679116 Sample_02_0480 Gingival epithelial HGEP 75 18 969 118 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,KRT15,FKBP10,JUP
SE_02_113200109 chr17:41645322-41680488 Sample_02_1132 Pancreas KLM1 wt 109 14 991 118 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,HAP1,KRT13
SE_02_094600260 chr17:41645664-41679760 Sample_02_0946 Tongue HN12 260 5 971 118 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,KRT15,KRT32,KRT36,NT5C3B
SE_02_066600009 chr17:41645770-41679125 Sample_02_0666 Prostate RWPE1 Lacz rep1 9 9 959 118 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,LEPREL4
SE_02_047700249 chr17:41648043-41679622 Sample_02_0477 Colon intestinal epithelial organoids_139a 249 8 908 114 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,LEPREL4,FKBP10
SE_02_098900159 chr17:41648088-41706257 Sample_02_0989 Kidney kidney cortex_WT 159 16 1689 194 2 110 400 EIF1,HAP1,GAST,KRT17,KRT42P,KRT16,KRT14,ACLY,LEPREL4,KLHL11,FKBP10,JUP,TTC25,NT5C3B
SE_02_047800334 chr17:41648092-41679681 Sample_02_0478 Colon normal colon mucosa 334 11 908 114 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,LEPREL4
SE_01_009900246 chr17:41648099-41679626 Sample_01_0099 Colon transverse colon 246 7 908 114 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,LEPREL4
SE_01_010900322 chr17:41648116-41697888 Sample_01_0109 Colon transverse colon_54y 322 11 1447 148 2 109 400 EIF1,HAP1,GAST,KRT17,KRT42P,KRT16,KRT14,LEPREL4
SE_02_123800100 chr17:41648119-41667129 Sample_02_1238 Skin MS1_virus_positive 100 11 527 43 0 45 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT9,KRT14,NT5C3B
SE_00_004900186 chr17:41648138-41679150 Sample_00_0049 Small intestine small intestine 30y 186 9 903 114 1 46 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14
SE_02_066500013 chr17:41649369-41666138 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 13 6 482 40 0 45 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT14,LEPREL4
SE_00_005000011 chr17:41651087-41666367 Sample_00_0050 Esophagus esophagus_30y 11 7 442 33 0 40 0 EIF1,GAST,KRT17,KRT16,KRT42P,KRT13,KRT15
SE_01_010700083 chr17:41768744-41801817 Sample_01_0107 Esophagus esophagus squamous epithelium 83 5 934 90 2 197 681 JUP,FKBP10,HAP1,P3H4,NT5C3B,KLHL10,KRT16,EIF1,LEPREL4
SE_02_048000359 chr17:41771951-41801689 Sample_02_0480 Gingival epithelial HGEP 359 14 820 82 2 169 306 JUP,FKBP10,HAP1,P3H4,NT5C3B,KLHL10,KRT17,KRT16,EIF1,LEPREL4,KLHL11
Genomic distribution of SEs associated with KRT16
Genome Browser

The strength of the tissue affected by the gene

Expression of KRT16

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)