SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000253293
Gene: HOXA10 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:27170592-27180261 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_084100245 chr7:27160037-27178673 Sample_02_0841 Blood THP-1_untr 245 1 536 25 0 396 1233 MIR196B,HOXA10,HOXA10-HOXA9,HOXA10-AS,HOXA9,HOXA11,HOXA-AS3,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA5,HOXA4,HOXA13,HOXA6,HOXA11-AS,HOXA2,HOXA1
SE_02_060500009 chr7:27161206-27196228 Sample_02_0605 Skin Skin Fibroblast_DMSO 9 1 1033 53 6 761 2597 MIR196B,HOXA10,HOXA11,HOXA10-HOXA9,HOXA11-AS,HOXA10-AS,HOXA9,EVX1,HOXA-AS3,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA5,HOXA4,HOXA13,HOXA6,HOXA1
SE_01_010900010 chr7:27162984-27196215 Sample_01_0109 Colon transverse colon_54y 10 1 983 48 6 728 2520 MIR196B,HOXA10,HOXA11,HOXA10-HOXA9,HOXA11-AS,HOXA10-AS,HOXA9,EVX1,HOXA-AS3,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA5,HOXA4,HOXA13,HOXA6,HOXA2,HOXA1
SE_00_003100452 chr7:27165497-27205935 Sample_00_0031 Placenta placenta 452 9 1142 62 11 816 3441 HOXA10,HOXA9,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA4,RP1-170O19.20
SE_02_084100436 chr7:27179925-27195224 Sample_02_0841 Blood THP-1_untr 436 1 462 27 6 345 1275 HOXA11-AS,HOXA10-HOXA9,HOXA10,HOXA11,EVX1,HOXA10-AS,HOXA-AS3,HOTTIP,HOXA7,HOXA5,MIR196B,HOXA4,HOXA9,HOXA13,HOXA6
SE_01_009900128 chr7:27181714-27194979 Sample_01_0099 Colon transverse colon 128 1 401 26 6 297 1062 HOXA11-AS,HOXA11,EVX1,HOXA10,HOXA10-AS,HOXA-AS3,HOTTIP,HOXA7,HOXA5,MIR196B,HOXA9,HOXA13,HOXA6,HOXA10-HOXA9,HOXA4,HOXA2,HOXA1,HOXA3
SE_02_047800180 chr7:27181761-27194498 Sample_02_0478 Colon normal colon mucosa 180 1 385 26 6 290 1057 HOXA11-AS,HOXA11,EVX1,HOXA10,HOXA10-AS,HOXA-AS3,HOTTIP,HOXA7,HOXA5,MIR196B,HOXA9,HOXA13,HOXA6,HOXA10-HOXA9,HOXA4,HOXA2,HOXA1,HOXA3
SE_02_060600346 chr7:27185376-27196111 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 346 1 313 20 4 169 576 HOXA11-AS,EVX1,HOXA10,HOXA10-AS,HOXA-AS3,HOTTIP,HOXA7,HOXA5,MIR196B,HOXA9,HOXA13,HOXA11,HOXA6,HOXA10-HOXA9,HOXA1,HOXA3
Genomic distribution of SEs associated with HOXA10
Genome Browser

The strength of the tissue affected by the gene

Expression of HOXA10

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)