SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000213420
Gene: GPC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:100169606-100177381 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200715 chr7:100118281-100128369 Sample_04_0002 Blood cold shocked K562 715 1 266 21 1 64 1085 TAF6,CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35
SE_02_109900847 chr7:100122193-100131089 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 847 3 202 15 1 43 854 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35,ZKSCAN5
SE_02_142900953 chr7:100210523-100245575 Sample_02_1429 Blood GM12878_WT 953 9 976 140 3 11 1503 STAG3,PVRIG,GATS,GPC2,GAL3ST4,PILRA,TAF6,PILRB,C7orf43,ZNF3,CNPY4,LAMTOR4,MBLAC1,AP4M1
Genomic distribution of SEs associated with GPC2
Genome Browser

The strength of the tissue affected by the gene

Expression of GPC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)