SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000170608
Gene: FOXA3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:45863989-45873797 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_047700694 chr19:45863378-45884336 Sample_02_0477 Colon intestinal epithelial organoids_139a 694 7 550 46 1 208 899 FOXA3,IRF2BP1,RSPH6A,NANOS2,MYPOP,SYMPK,DMPK,C19orf83,NOVA2,SNRPD2
SE_02_113000595 chr19:45866721-45889956 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 595 11 612 50 1 289 1197 FOXA3,IRF2BP1,MYPOP,SYMPK,NANOS2,RSPH6A,CCDC61,SIX5,DMWD
SE_02_109900523 chr19:45872674-45889779 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 523 8 454 37 1 262 1008 FOXA3,IRF2BP1,MYPOP,SYMPK,NANOS2,RSPH6A,CCDC61,SIX5,DMWD
SE_02_142300407 chr19:45873725-45889592 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 407 3 419 35 1 248 780 FOXA3,IRF2BP1,MYPOP,SYMPK,NANOS2,RSPH6A,CCDC61,SIX5,DMWD
SE_02_098800864 chr19:45873729-45889643 Sample_02_0988 Blood K562_EPZ 864 5 420 36 1 248 779 FOXA3,IRF2BP1,MYPOP,SYMPK,NANOS2,RSPH6A,CCDC61,SIX5,DMWD
SE_02_098901765 chr19:45876125-45901166 Sample_02_0989 Kidney kidney cortex_WT 1765 8 697 72 1 277 1161 IRF2BP1,MYPOP,SYMPK,FOXA3,NANOS2,C19orf83,DMWD,RSPH6A
Genomic distribution of SEs associated with FOXA3
Genome Browser

The strength of the tissue affected by the gene

Expression of FOXA3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)