SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000172538
Gene: FAM170B Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:49131154-49134021 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_090100920 chr10:49052757-49115375 Sample_02_0901 Heart left ventricle_LV1471 920 24 1818 183 15 148 553 VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128
SE_02_072701217 chr10:49138185-49178500 Sample_02_0727 Fetal lung IMR90_Etoposide 1217 9 1431 132 6 83 1039 FAM170B-AS1,C10ORF128,VSTM4,FAM170B
SE_04_000200261 chr10:49154016-49201206 Sample_04_0002 Blood cold shocked K562 261 4 1636 126 4 94 843 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_04_000100400 chr10:49154063-49189025 Sample_04_0001 Blood heat shocked K562 400 4 1272 106 4 81 843 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_109900149 chr10:49154068-49185999 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 149 19 1174 100 4 76 759 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_098700160 chr10:49154197-49188858 Sample_02_0987 Blood K562_Control_1 160 18 1262 104 4 81 843 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_098800085 chr10:49154198-49188849 Sample_02_0988 Blood K562_EPZ 85 14 1261 104 4 81 843 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_122900190 chr10:49155178-49200370 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 190 13 1583 122 4 88 843 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_111600498 chr10:49158393-49188710 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 498 12 1131 95 3 73 761 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10ORF71
SE_02_113000192 chr10:49158912-49188944 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 192 16 1120 96 3 73 761 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10ORF71
SE_02_054500265 chr10:49158957-49188841 Sample_02_0545 Bone marrow K562 WT 265 12 1115 96 3 73 761 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10ORF71
SE_02_103300462 chr10:49159400-49200871 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 462 12 1463 116 3 85 761 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10orf128,C10ORF71
SE_02_142300023 chr10:49159676-49186188 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 23 13 1008 90 3 66 677 C10ORF128,VSTM4,FAM170B,FAM170B-AS1,C10orf71,C10ORF71
Genomic distribution of SEs associated with FAM170B
Genome Browser

The strength of the tissue affected by the gene

Expression of FAM170B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)