SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000120705
Gene: ETF1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:138506095-138543236 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108200186 chr5:138438231-138466773 Sample_02_1082 Retina retina 186 9 727 71 3 131 1367 REEP2,EGR1,FAM53C,ETF1,CDC25C,GFRA3,HSPA9,KDM3B
SE_02_120301022 chr5:138439183-138467608 Sample_02_1203 Brain NB1 1022 7 722 71 3 162 1460 REEP2,EGR1,HSPA9,ETF1,KDM3B,FAM53C
SE_02_087500776 chr5:138450034-138476914 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 776 6 656 50 1 239 733 EGR1,REEP2,HSPA9,ETF1,KIF20A,KDM3B
SE_02_109900434 chr5:138459341-138494257 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 434 9 845 54 0 285 733 EGR1,REEP2,ETF1,MATR3
SE_02_098700290 chr5:138459603-138494051 Sample_02_0987 Blood K562_Control_1 290 8 836 53 0 277 733 EGR1,REEP2,ETF1,MATR3
SE_02_111600709 chr5:138460617-138493530 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 709 7 801 52 0 271 733 EGR1,REEP2,ETF1,MATR3
SE_02_054500738 chr5:138463172-138493494 Sample_02_0545 Bone marrow K562 WT 738 6 733 47 0 269 733 EGR1,REEP2,ETF1,MATR3
SE_02_098800210 chr5:138463231-138494347 Sample_02_0988 Blood K562_EPZ 210 9 754 48 0 274 733 EGR1,REEP2,ETF1,MATR3
SE_02_113000849 chr5:138463303-138494469 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 849 4 755 47 0 274 733 EGR1,REEP2,ETF1,MATR3
SE_01_010700645 chr5:138463391-138509083 Sample_01_0107 Esophagus esophagus squamous epithelium 645 13 1076 73 0 348 1081 ETF1,EGR1,REEP2,GFRA3,CTNNA1,HSPA9,KDM3B
SE_02_066600147 chr5:138463440-138466601 Sample_02_0666 Prostate RWPE1 Lacz rep1 147 1 88 4 0 101 240 EGR1,REEP2,BRD8,ETF1,GFRA3,HSPA9,KDM3B,FAM53C
SE_02_084500050 chr5:138463481-138466243 Sample_02_0845 Mammary gland MCF-7_DMSO_sgARID1A-2_KO 50 1 77 3 0 88 224 EGR1,REEP2,ETF1,CDC25C,HSPA9,KDM3B
SE_02_158300445 chr5:138506530-138555458 Sample_02_1583 Fetal lung IMR90_empty_GM 445 15 1245 80 1 170 998 ETF1,HSPA9,SNORD63,EGR1,KDM3B
Genomic distribution of SEs associated with ETF1
Genome Browser

The strength of the tissue affected by the gene

Expression of ETF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)