SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000184432
Gene: COPB2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:139353946-139389736 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000100426 chr3:139286646-139342087 Sample_04_0001 Blood heat shocked K562 426 6 1462 87 10 0 0 COPB2,MRPS22,LOC100507291,PIK3CB
SE_04_000200514 chr3:139287728-139355262 Sample_04_0002 Blood cold shocked K562 514 13 1758 115 11 0 348 MRPS22,COPB2,LOC100507291,PIK3CB
SE_02_111600473 chr3:139288244-139341578 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 473 20 1398 77 10 0 0 COPB2,MRPS22,LOC100507291,PIK3CB
SE_02_122900590 chr3:139288315-139354861 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 590 27 1727 114 11 0 348 MRPS22,COPB2,LOC100507291,PIK3CB
SE_02_054500539 chr3:139288439-139341741 Sample_02_0545 Bone marrow K562 WT 539 18 1397 80 10 0 0 COPB2,MRPS22,LOC100507291,PIK3CB
SE_00_004900391 chr3:139458965-139476538 Sample_00_0049 Small intestine small intestine 30y 391 16 440 35 3 50 118 LOC100507291,RBP2,COPB2
Genomic distribution of SEs associated with COPB2
Genome Browser

The strength of the tissue affected by the gene

Expression of COPB2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)