SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000121940
Gene: CLCC1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:108927361-108963504 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200325 chr1:109078520-109102445 Sample_04_0002 Blood cold shocked K562 325 5 618 55 0 76 602 TMEM167B,SCARNA2,C1ORF194,TAF13,WDR47,KIAA1324,SARS,STXBP3,CLCC1,SORT1,HENMT1,AKNAD1
SE_04_000100763 chr1:109079108-109102434 Sample_04_0001 Blood heat shocked K562 763 4 606 54 0 74 602 TMEM167B,SCARNA2,C1ORF194,TAF13,WDR47,KIAA1324,SARS,STXBP3,CLCC1,SORT1,HENMT1,AKNAD1
SE_02_113000425 chr1:109079402-109102426 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 425 6 600 53 0 72 602 TMEM167B,SCARNA2,C1ORF194,TAF13,WDR47,KIAA1324,SARS,STXBP3,CLCC1,SORT1,HENMT1,AKNAD1
SE_02_098700354 chr1:109079562-109106409 Sample_02_0987 Blood K562_Control_1 354 6 716 69 0 80 673 TMEM167B,SCARNA2,C1ORF194,TAF13,WDR47,KIAA1324,SARS,STXBP3,CLCC1,SORT1,FAM102B,HENMT1,AKNAD1
SE_02_109900362 chr1:109079604-109106494 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 362 8 721 71 0 80 686 TMEM167B,SCARNA2,C1ORF194,TAF13,WDR47,KIAA1324,SARS,STXBP3,CLCC1,SORT1,FAM102B,HENMT1,AKNAD1
SE_04_000100799 chr1:109176065-109219744 Sample_04_0001 Blood heat shocked K562 799 8 1180 134 1 151 2348 KIAA1324,SARS,CELSR2,CLCC1,PSRC1,AKNAD1,MYBPHL
Genomic distribution of SEs associated with CLCC1
Genome Browser

The strength of the tissue affected by the gene

Expression of CLCC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)