SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000139880
Gene: CDH24 Gene type: protein_coding
Strand: - External links:
Genomic region: chr14:23047062-23057538 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_146900163 chr14:22821828-22853714 Sample_02_1469 Umbilical Vein HUVEC 163 6 959 94 8 260 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_083200249 chr14:22822196-22853643 Sample_02_0832 Umblical vein HUVECs_TNF30min 249 12 951 94 8 258 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_083100310 chr14:22822226-22853604 Sample_02_0831 Umblical vein HUVECs_TNF0min 310 15 949 93 8 256 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_151800148 chr14:22822284-22853639 Sample_02_1518 Umbilical vein HUVEC_Scr 148 11 947 93 8 258 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_151900140 chr14:22822318-22853664 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 140 15 947 93 8 258 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_152000123 chr14:22822432-22853653 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 123 14 943 93 8 258 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10,RBM23,C14orf93,PSMB5,AJUBA,CDH24,AL135998.1
SE_02_092100622 chr14:22966994-23008147 Sample_02_0921 Heart embryonic heart_CS22 622 8 1027 79 1 247 2000 C14ORF93,AJUBA,PRMT5,RBM23,PSMB5,PSMB11,MIR4707,HAUS4,LOC101926933,CDH24,PRMT5-AS1,C14orf93,RP11-298I3.5
SE_02_098901167 chr14:22973669-23008554 Sample_02_0989 Kidney kidney cortex_WT 1167 5 899 60 1 234 1683 C14ORF93,AJUBA,PRMT5,PSMB5,HAUS4,MIR4707,PSMB11,LOC101926933,CDH24,RBM23,C14orf93,ACIN1,EFS,LRP10,REM2
SE_02_094600158 chr14:22973725-22983547 Sample_02_0946 Tongue HN12 158 2 263 17 0 134 925 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,C14orf93,PSMB5,ACIN1,CDH24
SE_02_049100067 chr14:22973858-22983866 Sample_02_0491 Pharyng Detroit 562-Control 67 1 267 18 0 133 922 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,C14orf93,PSMB5,LRP10,CDH24,REM2,SLC7A8
SE_02_049200069 chr14:22973872-22983899 Sample_02_0492 Pharyng Detroit 562_LPS 69 1 268 18 0 133 920 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,C14orf93,PSMB5,LRP10,CDH24,REM2,SLC7A8
SE_02_132200176 chr14:22974155-23008041 Sample_02_1322 Connective Tissue HT1080_WT 176 4 875 58 1 232 1628 C14ORF93,AJUBA,PRMT5,PSMB5,HAUS4,MIR4707,PSMB11,LOC101926933,CDH24,RBM23,C14orf93,ACIN1,C14orf119
SE_02_095000617 chr14:22974220-23008011 Sample_02_0950 Umbilical vein HUVEC_WT 617 6 869 58 1 232 1612 C14ORF93,AJUBA,PRMT5,PSMB5,HAUS4,MIR4707,PSMB11,LOC101926933,CDH24,C14orf93,LRP10,MMP14,AL135998.1,RP11-298I3.5
SE_02_132100151 chr14:22974284-23007813 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 151 5 865 58 1 232 1604 C14ORF93,AJUBA,PRMT5,PSMB5,HAUS4,MIR4707,PSMB11,LOC101926933,CDH24,RBM23,C14orf93,ACIN1,C14orf119
SE_02_094800120 chr14:22974346-22983814 Sample_02_0948 Pharyng Detroit562 120 2 253 17 0 132 851 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,C14orf93,PSMB5,LRP10,CDH24,REM2,SLC7A8
SE_02_083200534 chr14:22974353-22982577 Sample_02_0832 Umblical vein HUVECs_TNF30min 534 3 210 15 0 126 788 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,PSMB11,C14orf93,PSMB5,LRP10,CDH24
SE_02_132000302 chr14:22974562-23007783 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 302 5 857 57 1 232 1602 C14ORF93,AJUBA,PRMT5,PSMB5,HAUS4,MIR4707,PSMB11,LOC101926933,CDH24,RBM23,C14orf93,ACIN1,C14orf119
SE_02_094700190 chr14:22976132-22983437 Sample_02_0947 Tongue Cal27 190 1 181 11 0 119 734 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,C14orf93,PSMB5,ACIN1,CDH24
SE_02_058400811 chr14:22976172-22983511 Sample_02_0584 Lung H1299 WT 811 1 179 11 0 119 734 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,SLC7A7,C14orf93,PSMB5,ACIN1,MMP14,LRP10,C14orf119,CDH24
SE_02_131900173 chr14:22979165-22983281 Sample_02_1319 Connective Tissue HT1080_DDIT3 173 1 107 7 0 98 487 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93,RBM23,PSMB11,C14orf93,ACIN1,C14orf119,CDH24
SE_04_000200783 chr14:22994893-23022451 Sample_04_0002 Blood cold shocked K562 783 4 717 46 2 61 530 C14ORF93,AJUBA,CDH24,PSMB5,HAUS4,MIR4707,PSMB11,ACIN1,RBM23,PRMT5,C14orf93,C14orf119,LRP10,RP11-298I3.5
SE_02_123600196 chr14:22994980-23007937 Sample_02_1236 Skin MKL1_virus_positive 196 4 351 20 1 54 432 C14ORF93,AJUBA,PSMB5,HAUS4,MIR4707,PSMB11,CDH24,C14orf93,LRP10
SE_02_122901283 chr14:23004764-23034886 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1283 10 719 49 2 58 448 PSMB5,C14ORF93,AJUBA,CDH24,HAUS4,MIR4707,PSMB11,ACIN1,RBM23,PRMT5,C14orf93,C14orf119,LRP10,RP11-298I3.5
SE_02_054500802 chr14:23005540-23021554 Sample_02_0545 Bone marrow K562 WT 802 3 392 26 1 1 98 C14ORF93,AJUBA,PSMB5,HAUS4,MIR4707,PSMB11,CDH24,RBM23,PRMT5,C14orf93,ACIN1,C14orf119,LRP10,RP11-298I3.5
SE_02_113000798 chr14:23005751-23021574 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 798 2 391 26 1 1 98 C14ORF93,AJUBA,CDH24,PSMB5,HAUS4,MIR4707,PSMB11,ACIN1,RBM23,PRMT5,C14orf93,C14orf119,LRP10,RP11-298I3.5
SE_02_111600734 chr14:23005811-23021758 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 734 4 393 26 1 2 98 C14ORF93,AJUBA,CDH24,PSMB5,HAUS4,MIR4707,PSMB11,ACIN1,RBM23,PRMT5,C14orf93,C14orf119,LRP10,RP11-298I3.5
SE_02_058500788 chr14:23043653-23078941 Sample_02_0585 Umbilical vein HUVEC 0hour 788 8 980 57 0 429 3300 PSMB11,CDH24,ACIN1,C14ORF119,PSMB5,C14ORF93,CEBPE,C14orf119
SE_02_158300244 chr14:23059349-23093490 Sample_02_1583 Fetal lung IMR90_empty_GM 244 25 983 83 0 288 1722 ACIN1,C14ORF119,CDH24,PSMB5,PSMB11,C14ORF93,CEBPE,RP11-298I3.5
SE_02_049900419 chr14:23060417-23116125 Sample_02_0499 Fetal lung IMR90 IR Senescence 419 19 1560 136 4 440 2892 C14ORF119,ACIN1,CDH24,PSMB5,PSMB11,SLC7A8,CEBPE,RP11-298I3.5
SE_02_092900822 chr14:23060737-23080816 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 822 11 566 28 0 255 1489 ACIN1,C14ORF119,CDH24,PSMB5,PSMB11,CEBPE,C14orf93
SE_02_093000902 chr14:23061141-23085339 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 902 13 715 48 0 258 1505 ACIN1,C14ORF119,CDH24,PSMB5,PSMB11,CEBPE,C14orf93
Genomic distribution of SEs associated with CDH24
Genome Browser

The strength of the tissue affected by the gene

Expression of CDH24

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)