SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000117335
Gene: CD46 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:207752054-207795513 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111600305 chr1:207004779-207030069 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 305 5 767 64 0 87 1078 C1ORF116,YOD1,FCAMR,PFKFB2,CD46,C4BPB,IL24,C1orf116
SE_02_098800178 chr1:207007144-207030606 Sample_02_0988 Blood K562_EPZ 178 5 718 58 0 84 1041 C1ORF116,YOD1,FCAMR,PFKFB2,CD46,C4BPB,IL24,C1orf116
SE_02_098700345 chr1:207007215-207030675 Sample_02_0987 Blood K562_Control_1 345 7 717 58 0 84 1041 C1ORF116,YOD1,FCAMR,PFKFB2,CD46,C4BPB,IL24,C1orf116
SE_04_000200233 chr1:207620140-207652801 Sample_04_0002 Blood cold shocked K562 233 6 882 114 13 36 448 CR1L,CR1,CD46,CD55
SE_02_109900322 chr1:207620916-207651117 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 322 14 816 108 11 33 440 CR1L,CR1,CD46,CD55
SE_02_122900543 chr1:207620984-207658744 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 543 22 1027 137 11 48 440 CR1L,CR1,CD46,CD55
SE_02_054500119 chr1:207623178-207652631 Sample_02_0545 Bone marrow K562 WT 119 8 821 111 10 26 387 CR1L,CR1,CD46,CD55
SE_04_000100552 chr1:207623321-207652233 Sample_04_0001 Blood heat shocked K562 552 4 802 109 10 26 383 CR1L,CR1,CD46,CD55
SE_02_111600371 chr1:207623485-207652143 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 371 6 792 109 10 26 383 CR1L,CR1,CD46,CD55
SE_02_098700214 chr1:207624894-207652223 Sample_02_0987 Blood K562_Control_1 214 7 767 106 10 26 383 CR1L,CR1,CD46,CD55
SE_01_003900072 chr1:207624939-207651115 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 72 3 739 103 10 26 383 CR1L,CR1,CD46,CD55
SE_02_098800231 chr1:207625068-207650588 Sample_02_0988 Blood K562_EPZ 231 8 713 100 10 26 383 CR1L,CR1,CD46,CD55
SE_02_113000374 chr1:207625250-207652674 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 374 9 777 108 10 27 383 CR1L,CR1,CD46,CD55
SE_02_054700052 chr1:207625269-207652230 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 52 7 758 106 10 26 383 CR1L,CR1,CD46,CD55
SE_02_142200131 chr1:207625739-207650038 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 131 6 683 95 9 26 383 CR1L,CR1,CD46,CD55
SE_02_142300170 chr1:207626513-207649987 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 170 5 660 94 9 26 383 CR1L,CR1,CD46,CD55
SE_02_101800148 chr1:207643384-207652194 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 148 2 288 43 2 10 142 CR1L,CD46,CR1
SE_00_003101243 chr1:207726961-207753833 Sample_00_0031 Placenta placenta 1243 4 627 77 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_04_000100419 chr1:207743076-207755854 Sample_04_0001 Blood heat shocked K562 419 1 276 27 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_04_000200464 chr1:207743257-207757684 Sample_04_0002 Blood cold shocked K562 464 1 317 30 1 14 237 CD46,MIR29C,MIR29B2,CR1L
SE_02_109900904 chr1:207743750-207755723 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 904 7 268 25 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_02_098700317 chr1:207743766-207782574 Sample_02_0987 Blood K562_Control_1 317 11 957 94 5 34 410 CD46,LOC148696,MIR29C,MIR29B2,CR1L
SE_02_054500717 chr1:207745264-207753631 Sample_02_0545 Bone marrow K562 WT 717 1 184 17 0 11 160 CD46,MIR29C,MIR29B2,CR1L
SE_02_054700212 chr1:207745381-207751955 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 212 3 133 14 0 0 24 CD46,MIR29C,CR1L
SE_02_113000384 chr1:207745394-207755721 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 384 3 235 20 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_02_111600417 chr1:207745473-207755653 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 417 2 233 20 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_02_098800965 chr1:207745856-207766652 Sample_02_0988 Blood K562_EPZ 965 6 492 48 4 32 311 CD46,MIR29C,MIR29B2,CR1L
SE_02_142400176 chr1:207747502-207756275 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 176 3 207 15 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_02_142300285 chr1:207747597-207754505 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 285 2 168 13 0 12 160 CD46,MIR29C,MIR29B2,CR1L
SE_01_010400011 chr1:207803490-207925970 Sample_01_0104 Lung upper lobe of left lung 11 38 3111 345 14 542 2731 CD34,LOC148696,MIR29C,MIR29B2,CD46
SE_02_095000226 chr1:207804767-207869678 Sample_02_0950 Umbilical vein HUVEC_WT 226 43 1623 197 5 334 1642 LOC148696,CD34,MIR29C,MIR29B2,CD46
SE_02_152900280 chr1:207805700-207869772 Sample_02_1529 Peripheral blood neutrophils_0BC75 280 16 1600 193 5 334 1642 LOC148696,CD34,MIR29C,MIR29B2,CD46
SE_02_092700237 chr1:207805976-207869218 Sample_02_0927 Peripheral blood neutrophils_US 237 16 1582 193 5 334 1604 LOC148696,CD34,MIR29C,MIR29B2,CD46
SE_02_098900735 chr1:207818403-207829842 Sample_02_0989 Kidney kidney cortex_WT 735 1 240 23 1 155 777 LOC148696,MIR29C,MIR29B2,CD34,CD46
SE_02_153000776 chr1:207821397-207829809 Sample_02_1530 Peripheral blood neutrophils_0BA0X 776 1 155 15 1 131 285 LOC148696,MIR29C,MIR29B2,CD46
SE_02_092800467 chr1:207822026-207869170 Sample_02_0928 Peripheral blood neutrophils_Ecoli 467 12 1187 165 5 257 670 LOC148696,CD34,MIR29C,MIR29B2,CD46
Genomic distribution of SEs associated with CD46
Genome Browser

The strength of the tissue affected by the gene

Expression of CD46

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)