SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID:
Gene: CASC1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087800451 chr12:24895348-24949910 Sample_02_0878 Ovary SVOG3e cells_noDox_control 451 11 1491 130 11 13 448 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_087900443 chr12:24895460-24949952 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 443 11 1486 130 11 13 448 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_088100514 chr12:24895480-24949719 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 514 10 1480 130 11 13 448 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_088200652 chr12:24895930-24949868 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 652 12 1473 130 11 13 448 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_088300582 chr12:24895961-24949918 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 582 13 1474 130 11 13 448 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_088001266 chr12:24937344-24949821 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1266 4 351 27 5 0 162 BCAT1,C12ORF77,LYRM5,CASC1
SE_02_121800092 chr12:24991336-25028116 Sample_02_1218 Bone marrow Daudi 92 19 1024 67 4 8 435 C12ORF77,LRMP,BCAT1,LYRM5,C12orf77,CASC1
Genomic distribution of SEs associated with CASC1
Genome Browser

The strength of the tissue affected by the gene

Expression of CASC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)