SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000115998
Gene: C2ORF42 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:70149885-70248615 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_011200122 chr2:70104762-70143646 Sample_01_0112 Embryonic kidney HEK293_encode 122 8 1066 112 1 47 273 LOC100133985,PCBP1,PCBP1-AS1,C2ORF42,SNRPG,C2orf42,TIA1,ASPRV1
SE_02_123800163 chr2:70118716-70143610 Sample_02_1238 Skin MS1_virus_positive 163 8 699 84 1 44 273 LOC100133985,PCBP1,PCBP1-AS1,C2ORF42,SNRPG,C2orf42
SE_04_000500190 chr2:70123286-70143612 Sample_04_0005 Lung A549 FOXA2 overexpressed 190 5 588 71 1 44 273 LOC100133985,PCBP1,PCBP1-AS1,C2ORF42,C2orf42,FAM136A
SE_02_059100187 chr2:70130788-70144356 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 187 6 420 56 1 44 0 PCBP1,LOC100133985,PCBP1-AS1,C2ORF42,C2orf42
SE_02_094100344 chr2:70131363-70143617 Sample_02_0941 Brain T98G 344 7 389 54 1 44 0 PCBP1,LOC100133985,PCBP1-AS1,C2ORF42,C2orf42,TIA1
SE_04_000900497 chr2:70131657-70143710 Sample_04_0009 Lung A549 497 4 377 53 1 44 0 PCBP1,LOC100133985,PCBP1-AS1,C2ORF42,C2orf42,FAM136A
SE_02_093000973 chr2:70131878-70138584 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 973 1 187 23 0 13 0 PCBP1,LOC100133985,PCBP1-AS1,PCYOX1,C2orf42
SE_02_062000695 chr2:70131910-70143504 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 695 6 367 51 1 44 0 PCBP1,LOC100133985,PCBP1-AS1,C2ORF42,C2orf42,FAM136A
SE_04_000600505 chr2:70131922-70143407 Sample_04_0006 Lung A549 GFP control 505 4 365 51 1 44 0 PCBP1,LOC100133985,PCBP1-AS1,C2ORF42,C2orf42,FAM136A
SE_02_122901098 chr2:70288378-70302054 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1098 9 380 41 1 32 678 SNRPG,FAM136A,MIR1285-2,PCYOX1,TIA1,GMCL1,C2orf42,PCBP1
Genomic distribution of SEs associated with C2ORF42
Genome Browser

The strength of the tissue affected by the gene

Expression of C2ORF42

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)