SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000187997
Gene: C17ORF99 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:78146353-78166177 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200776 chr17:78015936-78063149 Sample_04_0002 Blood cold shocked K562 776 7 1296 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_04_000100870 chr17:78016064-78063079 Sample_04_0001 Blood heat shocked K562 870 8 1293 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_02_089701046 chr17:78078911-78128686 Sample_02_0897 Heart left ventricle_LV1325 1046 11 1665 88 3 0 4090 TMC6,TNRC6C,TNRC6C-AS1,C17ORF99,TMC8,SYNGR2,C17orf99
SE_02_121800038 chr17:78227267-78289893 Sample_02_1218 Bone marrow Daudi 38 26 1992 142 6 0 2276 TMEM235,LOC100996291,AFMID,TK1,BIRC5,TNRC6C,C17orf99,SYNGR2,TMC6,TMC8
SE_02_072500404 chr17:78329337-78353431 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 404 9 712 6 1 141 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
SE_02_072600260 chr17:78329340-78354066 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 260 10 731 6 1 142 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
Genomic distribution of SEs associated with C17ORF99
Genome Browser

The strength of the tissue affected by the gene

Expression of C17ORF99

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)