SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000104221
Gene: BRF2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr8:37843268-37849861 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_004000876 chr8:37782321-37826856 Sample_00_0040 Spleen spleen_30y 876 8 1283 52 3 189 424 GPR124,ERLIN2,PROSC,BRF2,LOC728024,RAB11FIP1
SE_00_005501215 chr8:37782567-37826529 Sample_00_0055 Spleen spleen 34y 1215 16 1264 52 3 178 424 ADGRA2,ERLIN2,PROSC,BRF2,LOC102723701,LOC728024,RAB11FIP1
SE_02_077500934 chr8:37791933-37855516 Sample_02_0775 Pancreas EndoC-BH1_SE 934 23 1948 59 4 358 3370 BRF2,ADGRA2,LOC728024,RAB11FIP1,PROSC
SE_04_000200213 chr8:37835084-37924949 Sample_04_0002 Blood cold shocked K562 213 12 2293 45 0 277 4130 BRF2,RAB11FIP1,ADGRA2,ADRB3,GOT1L1,GPR124,ASH2L,PROSC
SE_02_090100949 chr8:37843084-37897511 Sample_02_0901 Heart left ventricle_LV1471 949 23 1412 28 0 160 2543 BRF2,RAB11FIP1,ADGRA2,GOT1L1
SE_02_122900231 chr8:37847656-37911801 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 231 43 1582 35 0 164 2295 BRF2,RAB11FIP1,GOT1L1,GPR124,ASH2L,PROSC
SE_04_000100408 chr8:37851820-37925659 Sample_04_0001 Blood heat shocked K562 408 11 1786 36 0 155 2105 RAB11FIP1,BRF2,ADRB3,GOT1L1,GPR124,ASH2L,PROSC
SE_02_111600386 chr8:37851889-37910712 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 386 23 1434 31 0 148 2105 RAB11FIP1,BRF2,GOT1L1,GPR124,ASH2L,PROSC
SE_02_153000285 chr8:37851970-37913352 Sample_02_1530 Peripheral blood neutrophils_0BA0X 285 18 1486 31 0 148 2105 RAB11FIP1,BRF2,GOT1L1,EIF4EBP1,GPR124
SE_02_142400037 chr8:37852386-37910722 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 37 18 1416 31 0 147 2105 RAB11FIP1,BRF2,GOT1L1,GPR124,ASH2L,PROSC
SE_02_052600318 chr8:37852793-37925938 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 318 14 1764 36 0 154 2105 RAB11FIP1,BRF2,ADRB3,GOT1L1
SE_02_113000289 chr8:37853185-37910701 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 289 18 1397 31 0 147 2105 RAB11FIP1,BRF2,GOT1L1,GPR124,ASH2L,PROSC
SE_02_109900112 chr8:37855974-37928369 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 112 32 1754 35 0 152 2105 RAB11FIP1,BRF2,ADRB3,GOT1L1,PROSC
SE_02_152900224 chr8:37871224-37916214 Sample_02_1529 Peripheral blood neutrophils_0BC75 224 17 1048 21 0 130 942 RAB11FIP1,BRF2,GOT1L1,EIF4EBP1,GPR124
SE_02_092700436 chr8:37872541-37913138 Sample_02_0927 Peripheral blood neutrophils_US 436 15 938 18 0 118 724 RAB11FIP1,BRF2,GOT1L1,EIF4EBP1,GPR124
SE_02_153100252 chr8:37873456-37906115 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 252 13 760 14 0 117 583 RAB11FIP1,BRF2,GOT1L1,EIF4EBP1,GPR124
SE_02_121800828 chr8:37880350-37906872 Sample_02_1218 Bone marrow Daudi 828 16 577 11 0 91 231 RAB11FIP1,BRF2,GOT1L1,EIF4EBP1,ASH2L,GPR124
SE_02_098700125 chr8:37880555-37925145 Sample_02_0987 Blood K562_Control_1 125 16 992 18 0 98 231 RAB11FIP1,BRF2,ADRB3,GOT1L1
Genomic distribution of SEs associated with BRF2
Genome Browser

The strength of the tissue affected by the gene

Expression of BRF2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)