SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000171953
Gene: ATPAF2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:17977409-18039209 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_046600241 chr17:17681351-17755919 Sample_02_0466 Adipose visceral adipocytes 241 46 1982 132 1 305 309 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,GID4,ATPAF2,PEMT
SE_02_076600145 chr17:17681438-17753017 Sample_02_0766 Ovary PEO1 145 39 1891 128 1 301 286 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,ATPAF2
SE_02_077000243 chr17:17681757-17754031 Sample_02_0770 Ovary OVCA429_shLuc 243 50 1916 129 1 290 186 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,ATPAF2
SE_02_146300117 chr17:17682899-17758468 Sample_02_1463 Ovary A2780_shMBD3.232 117 20 2034 134 1 281 121 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,ATPAF2
SE_02_077100262 chr17:17683012-17753285 Sample_02_0771 Ovary OVCA429_shGRHL2 262 27 1864 123 1 261 121 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,ATPAF2
SE_02_076700405 chr17:17710472-17753774 Sample_02_0767 Ovary OVCA429 405 26 1099 79 1 158 121 RAI1,SMCR2,SMCR5,RAI1-AS1,SREBF1,ATPAF2
SE_02_094100168 chr17:17820016-17850068 Sample_02_0941 Brain T98G 168 8 767 79 5 82 1605 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,DRG2,MED9,ATPAF2
SE_02_100000144 chr17:17821603-17842358 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 144 10 493 55 2 45 312 SREBF1,SMCR5,MIR6777,MIR33B,LRRC48,TOM1L2,RAI1,ATPAF2
SE_02_047700757 chr17:17835006-17842185 Sample_02_0477 Colon intestinal epithelial organoids_139a 757 1 153 17 1 27 174 SREBF1,MIR6777,MIR33B,TOM1L2,GID4,ATPAF2
SE_01_010500704 chr17:17836301-17841815 Sample_01_0105 Thyroid gland thyroid gland_54y 704 1 113 14 1 25 174 SREBF1,MIR6777,MIR33B,LRRC48,TOM1L2,GID4,RAI1,ATPAF2
SE_02_100500151 chr17:17839759-17856486 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 151 6 465 37 3 59 1163 TOM1L2,MIR6777,MIR33B,SREBF1,LRRC48,RAI1,ATPAF2
SE_01_010000047 chr17:17839813-17852507 Sample_01_0100 Thyroid gland thyroid gland_37y 47 6 359 34 3 50 1163 TOM1L2,MIR6777,MIR33B,SREBF1,LRRC48,GID4,RAI1,ATPAF2
SE_01_011500180 chr17:17899825-17944477 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 180 17 1077 102 2 131 75 TOM1L2,LRRC48,SREBF1,ATPAF2
Genomic distribution of SEs associated with ATPAF2
Genome Browser

The strength of the tissue affected by the gene

Expression of ATPAF2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)