SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000234396
Gene: AL590822.1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr1:2212523-2220738 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002200849 chr1:2081922-2112786 Sample_00_0022 Lung lung_30y 849 8 1390 126 1 9 129 PRKCZ,AL590822.1
SE_00_003100093 chr1:2087383-2137312 Sample_00_0031 Placenta placenta 93 4 2003 170 1 27 229 PRKCZ,AL590822.1,C1orf222,C1orf86,SKI
SE_02_093000216 chr1:2087991-2140589 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 216 20 2098 181 5 31 229 PRKCZ,C1orf222,SKI,C1orf86,AL590822.1
SE_02_092300023 chr1:2179792-2334981 Sample_02_0923 Heart fetal heart_PCW10_12522 23 48 5583 289 11 429 5076 FAAP20,PRKCZ,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_00_003100571 chr1:2187568-2236219 Sample_00_0031 Placenta placenta 571 9 1569 69 2 149 2159 C1ORF86,LOC100128003,SKI,AL590822.1,C1orf86
SE_02_092100033 chr1:2187796-2331803 Sample_02_0921 Heart embryonic heart_CS22 33 47 5115 262 11 413 3816 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_00_001100106 chr1:2188958-2236388 Sample_00_0011 Esophagus esophagus 106 7 1521 68 2 151 2159 C1ORF86,LOC100128003,SKI,AL590822.1,C1orf86
SE_02_092200043 chr1:2188979-2331737 Sample_02_0922 Heart fetal heart_PCW10_12434 43 46 5071 261 11 413 3816 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_058500516 chr1:2188988-2256728 Sample_02_0585 Umbilical vein HUVEC 0hour 516 15 2255 108 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_01_009800043 chr1:2189009-2323003 Sample_01_0098 Heart left ventricle_51y 43 35 4694 240 11 406 3682 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_089200106 chr1:2189017-2322587 Sample_02_0892 Heart left ventricle_LV1215 106 37 4670 240 11 405 3682 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_01_010700039 chr1:2189017-2335216 Sample_01_0107 Esophagus esophagus squamous epithelium 39 38 5222 271 11 417 4055 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_00_003900036 chr1:2189022-2257409 Sample_00_0039 Spleen spleen_3y 36 9 2278 109 3 193 2159 C1ORF86,LOC100128003,SKI,AL590822.1,C1orf86
SE_02_095000028 chr1:2189025-2335493 Sample_02_0950 Umbilical vein HUVEC_WT 28 57 5232 273 11 418 4055 FAAP20,MORN1,SKI,LOC100129534,PRKCZ,C1orf86,RER1,PANK4,AL590822.1
SE_02_146900005 chr1:2189029-2323226 Sample_02_1469 Umbilical Vein HUVEC 5 27 4712 242 11 406 3682 FAAP20,MORN1,SKI,LOC100129534,PRKCZ,C1orf86,RER1,PANK4,AL590822.1
SE_02_049900624 chr1:2189039-2256326 Sample_02_0499 Fetal lung IMR90 IR Senescence 624 16 2235 105 3 189 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_02_089600035 chr1:2189044-2322984 Sample_02_0896 Heart left ventricle_LV1294 35 38 4689 240 11 406 3682 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_090100069 chr1:2189049-2322602 Sample_02_0901 Heart left ventricle_LV1471 69 37 4666 240 11 405 3682 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_092400035 chr1:2189067-2331789 Sample_02_0924 Heart fetal heart_PCW10_12569 35 48 5067 261 11 413 3816 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_00_002100114 chr1:2189073-2257133 Sample_00_0021 Lung lung_3y 114 9 2269 108 3 193 2159 C1ORF86,SKI,LOC100128003,AL590822.1,C1orf86
SE_00_005500037 chr1:2189081-2257009 Sample_00_0055 Spleen spleen 34y 37 19 2263 108 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_00_004600035 chr1:2189082-2256670 Sample_00_0046 Heart right ventricle_34y 35 20 2244 108 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_02_092500094 chr1:2189088-2331729 Sample_02_0925 Heart fetal heart_PCW17_12570 94 38 5064 261 11 413 3816 FAAP20,MORN1,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_089300306 chr1:2189133-2256620 Sample_02_0893 Heart left ventricle_LV1226 306 14 2242 108 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_01_010400006 chr1:2189134-2323022 Sample_01_0104 Lung upper lobe of left lung 6 31 4690 240 11 406 3682 FAAP20,MORN1,SKI,LOC100129534,CFAP74,C1orf86,TNFRSF14,PEX10,RER1,PANK4,AL590822.1
SE_02_089800234 chr1:2189176-2257383 Sample_02_0898 Heart left ventricle_LV1356 234 16 2274 109 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_02_089100085 chr1:2189188-2314885 Sample_02_0891 Heart left ventricle_LV1202 85 37 4412 221 9 380 3503 FAAP20,SKI,LOC100129534,C1orf86,AL590822.1
SE_02_050000457 chr1:2189218-2247162 Sample_02_0500 Fetal lung IMR90_#2 457 16 1899 86 2 175 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_00_002900028 chr1:2189307-2235521 Sample_00_0029 Ovary ovary 28 15 1481 65 2 147 2159 C1ORF86,SKI,LOC100128003,AL590822.1,C1orf86
SE_00_005700052 chr1:2189350-2256652 Sample_00_0057 Heart right ventricle 3y 52 24 2237 106 3 193 2159 FAAP20,SKI,C1orf86,AL590822.1
SE_00_004000793 chr1:2226694-2235903 Sample_00_0040 Spleen spleen_30y 793 1 306 12 0 53 335 SKI,LOC100128003,C1ORF86,AL590822.1,C1orf86
SE_00_005500441 chr1:2270040-2318289 Sample_00_0055 Spleen spleen 34y 441 22 1840 109 7 184 1344 SKI,LOC100129534,PLCH2,RER1,AL590822.1
Genomic distribution of SEs associated with AL590822.1
Genome Browser

The strength of the tissue affected by the gene

Expression of AL590822.1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)