SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000204310
Gene: AGPAT1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:32168212-32178096 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002900037 chr6:32080694-32155157 Sample_00_0029 Ovary ovary 37 30 1524 161 48 566 4927 LOC100507547,TNXB,PPT2,PRRT1,ATF6B,FKBPL,AGPAT1,RNF5,RNF5P1,EGFL8,GPSM3,AGER,PBX2,C4B,CYP21A2,GPS3
SE_00_001100238 chr6:32175136-32197679 Sample_00_0011 Esophagus esophagus 238 4 514 58 38 325 4101 AGER,PBX2,RNF5,RNF5P1,GPSM3,AGPAT1,NOTCH4,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,LOC100507547,GPS3,TNXB
SE_00_003900105 chr6:32175215-32197872 Sample_00_0039 Spleen spleen_3y 105 5 517 59 38 325 4110 AGER,PBX2,RNF5,RNF5P1,GPSM3,AGPAT1,NOTCH4,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,LOC100507547,C4B,CYP21A2,GPS3
SE_00_004000066 chr6:32175351-32197803 Sample_00_0040 Spleen spleen_30y 66 5 514 58 38 325 4110 AGER,PBX2,RNF5,RNF5P1,GPSM3,AGPAT1,NOTCH4,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,LOC100507547,C4B,CYP21A2,GPS3
Genomic distribution of SEs associated with AGPAT1
Genome Browser

The strength of the tissue affected by the gene

Expression of AGPAT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)