SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000183077
Gene: AFMID Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:78187317-78207701 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120500181 chr17:78037296-78129969 Sample_02_1205 Brain NB3 181 36 2836 152 13 149 5098 TMC6,TNRC6C,TNRC6C-AS1,C17ORF99,TMC8,SYNGR2,AFMID,TMEM235
SE_02_120400955 chr17:78110768-78118382 Sample_02_1204 Brain NB2 955 1 336 8 1 0 749 TMC6,TNRC6C-AS1,C17ORF99,TMC8,TNRC6C,AFMID,TMEM235,SYNGR2
SE_02_100500205 chr17:78113954-78126489 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 205 8 576 25 1 0 1701 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100000329 chr17:78114157-78126726 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 329 9 577 25 1 0 1755 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100300090 chr17:78114741-78125781 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 90 5 514 21 0 0 1514 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_059100394 chr17:78120911-78140449 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 394 11 741 62 0 0 3138 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2
SE_02_059300395 chr17:78121372-78140947 Sample_02_0593 Fetal spleenocytes fetal naive T cells 395 6 746 60 0 0 3093 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2,BIRC5,SOCS3
SE_00_005500597 chr17:78124170-78133070 Sample_00_0055 Spleen spleen 34y 597 1 317 21 0 0 1629 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,AFMID,BIRC5,TK1,SOCS3
SE_01_010401093 chr17:78247669-78273212 Sample_01_0104 Lung upper lobe of left lung 1093 8 838 61 0 0 1061 LOC100996291,TMEM235,BIRC5,AFMID,TK1,SOCS3
SE_02_059100564 chr17:78251093-78273332 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 564 8 720 49 0 0 1061 LOC100996291,TMEM235,BIRC5,AFMID,TK1
SE_02_085900082 chr17:78294000-78358648 Sample_02_0859 Prostate PC3 82 9 2116 29 3 254 425 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127600071 chr17:78294092-78357710 Sample_02_1276 Prostate PC3_GSK126 71 25 2079 27 3 233 192 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_094600106 chr17:78294341-78357440 Sample_02_0946 Tongue HN12 106 12 2066 27 3 233 140 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_094700095 chr17:78300927-78360112 Sample_02_0947 Tongue Cal27 95 13 1873 24 3 288 755 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_046500199 chr17:78306764-78360099 Sample_02_0465 Adipose subcutaneous adipocytes 199 19 1670 18 3 279 750 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,TMC8
SE_01_011700015 chr17:78313634-78360060 Sample_01_0117 Lung fibroblast of lung 15 16 1434 16 2 279 743 SOCS3,LOC100996291,LOC101928674,PGS1,TMC6,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_102400091 chr17:78313641-78343650 Sample_02_1024 Prostate PC3 cells 91 10 959 10 2 110 0 LOC100996291,LOC101928674,PGS1,SOCS3,AFMID,BIRC5,SYNGR2,TMC6
SE_02_094900840 chr17:78313779-78358378 Sample_02_0949 Umbilical artery HUAEC_WT 840 20 1391 15 2 229 353 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2
SE_02_127500213 chr17:78313880-78357973 Sample_02_1275 Prostate PC3_Vorinostat 213 27 1376 15 2 225 269 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127400058 chr17:78313965-78356891 Sample_02_1274 Prostate PC3_DMSO 58 22 1347 13 2 221 37 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_112800379 chr17:78314089-78353829 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 379 13 1233 11 2 193 0 LOC100996291,LOC101928674,PGS1,SOCS3,AFMID,BIRC5,TK1
SE_02_072500404 chr17:78329337-78353431 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 404 9 712 6 1 141 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
SE_02_072600260 chr17:78329340-78354066 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 260 10 731 6 1 142 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
Genomic distribution of SEs associated with AFMID
Genome Browser

The strength of the tissue affected by the gene

Expression of AFMID

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)