SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000135925
Gene: WNT10A Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:218880852-218899581 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103500295 chr2:218839014-218909423 Sample_02_1035 Mammary gland HCC70_Vehicle 295 20 1643 72 9 617 1748 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_103600332 chr2:218840146-218909429 Sample_02_1036 Mammary gland HCC70_XY018 332 21 1618 71 9 617 1748 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_102900452 chr2:218847042-218909963 Sample_02_1029 Colon HCT116 452 17 1455 54 8 617 1748 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_104900224 chr2:218847938-218909482 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 224 24 1414 53 8 617 1748 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_104700247 chr2:218848076-218909482 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 247 18 1412 53 8 617 1748 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_136000171 chr2:218849412-218909830 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 171 15 1386 52 8 615 1748 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_136200136 chr2:218849532-218909872 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 136 16 1383 52 8 615 1748 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_136100090 chr2:218850143-218909838 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 90 14 1364 52 8 614 1748 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_031200464 chr2:218852548-218911105 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 464 8 1321 52 9 619 1748 WNT10A,WNT6,PRKAG3,CDK5R2
SE_02_029600407 chr2:218852774-218894277 Sample_02_0296 Neuroblastoma CLB-BER-Lud 407 6 914 35 7 524 1604 WNT10A,WNT6,PRKAG3
SE_02_025300370 chr2:218852904-218910034 Sample_02_0253 Brain BE2C_DMSO 370 7 1301 51 9 611 1748 WNT10A,WNT6,PRKAG3,CDK5R2
SE_02_042100652 chr2:218853033-218910136 Sample_02_0421 Brain BE2C_3 652 7 1302 52 9 608 1748 WNT10A,WNT6,PRKAG3,CDK5R2
SE_02_039600687 chr2:218864617-218909690 Sample_02_0396 Skin NHEK-D 687 9 1041 39 6 460 1546 WNT10A,WNT6,PRKAG3,CDK5R2
SE_02_087200520 chr2:218866136-218892566 Sample_02_0872 Colon HCT116_siCtrl-5FU 520 6 590 21 5 322 1105 WNT10A,WNT6,MIR9500,PRKAG3,LINC01494
SE_02_021600387 chr2:218866160-218898322 Sample_02_0216 Skin NHEK_scramble 387 9 722 28 6 427 1402 WNT10A,WNT6,PRKAG3
SE_02_081800686 chr2:218867603-218909804 Sample_02_0818 Ovary High-grade serous ovarian cancer 686 8 987 36 5 437 1546 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_142900898 chr2:218867839-218910137 Sample_02_1429 Blood GM12878_WT 898 7 983 36 6 437 1546 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3,ZNF142,TTLL4,RNF25
SE_02_133100807 chr2:218870572-218898819 Sample_02_1331 Blood Molm13_CTRL 807 4 636 26 5 399 1402 WNT10A,WNT6,MIR9500,PRKAG3,LINC01494
SE_02_010600413 chr2:218870717-218898240 Sample_02_0106 Skin NHEK_M 413 5 621 25 5 392 1402 WNT10A,WNT6,PRKAG3
SE_02_078300408 chr2:218870766-218909945 Sample_02_0783 Blood MEC2 408 7 910 34 5 409 1546 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_122600180 chr2:218870824-218909834 Sample_02_1226 Bone marrow RPMI-8226 180 6 908 34 5 409 1546 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_078200559 chr2:218870832-218910131 Sample_02_0782 Blood MEC1 559 9 911 35 6 409 1544 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_087400294 chr2:218871024-218898136 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 294 6 615 25 5 391 1358 WNT10A,WNT6,MIR9500,PRKAG3,LINC01494
SE_02_104800382 chr2:218871110-218909468 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 382 18 894 34 5 405 1481 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_122700189 chr2:218871173-218909926 Sample_02_1227 Bone marrow U266 189 9 904 34 5 402 1469 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_122400311 chr2:218871210-218909467 Sample_02_1224 Bone marrow normal plasma cell 311 5 893 34 5 400 1460 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_122000168 chr2:218871213-218909378 Sample_02_1220 Bone marrow JJN3 168 11 890 34 5 400 1459 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_073500042 chr2:218871268-218910652 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 42 8 911 35 6 398 1444 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_072800099 chr2:218871335-218910437 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 99 8 906 35 6 398 1434 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_073300067 chr2:218871348-218910575 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 67 7 908 35 6 398 1426 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_072900051 chr2:218871365-218910571 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 51 6 908 35 6 398 1424 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_078400541 chr2:218871403-218910221 Sample_02_0784 Blood OSU-CLL 541 11 902 35 6 398 1409 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_073400054 chr2:218871548-218910486 Sample_02_0734 Lymphoma PAR_Mantle cell lymphoma tissue_DMSO 54 5 904 35 6 396 1376 LINC01494,WNT10A,WNT6,MIR9500,CDK5R2,PRKAG3
SE_02_082600510 chr2:218872279-218909422 Sample_02_0826 Stomach gastric tumor 510 14 869 33 5 388 1269 LINC01494,WNT10A,WNT6,MIR9500,PRKAG3
SE_02_027800386 chr2:218872875-218895770 Sample_02_0278 Retina FW24 386 4 519 21 5 316 1125 WNT10A,WNT6,PRKAG3
SE_02_087300387 chr2:218873320-218893501 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 387 3 450 16 4 294 984 WNT10A,WNT6,PRKAG3,LINC01494
SE_02_037200182 chr2:218875852-218910188 Sample_02_0372 Skeletal muscle RMS008 182 6 795 31 6 360 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_021101078 chr2:218876547-218897530 Sample_02_0211 Lung MRC-5_NFD_1DPT 1078 6 477 20 5 328 866 WNT10A,PRKAG3,WNT6
SE_02_042400367 chr2:218876744-218910253 Sample_02_0424 Colon SW620 367 4 781 31 6 354 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_035600207 chr2:218876834-218910281 Sample_02_0356 Colon Sw480 207 4 781 31 6 354 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_122500388 chr2:218876844-218910496 Sample_02_1225 Bone marrow RAJI 388 13 783 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123700156 chr2:218876848-218909826 Sample_02_1237 Skin MKL2_virus_positive 156 10 775 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123900258 chr2:218876863-218909898 Sample_02_1239 Skin Waga_virus_positive 258 12 776 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_073100097 chr2:218876869-218910607 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 97 5 783 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123600144 chr2:218876870-218909911 Sample_02_1236 Skin MKL1_virus_positive 144 11 776 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2,FEV,CRYBA2
SE_02_104000123 chr2:218876893-218909467 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 123 18 764 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6
SE_02_122100056 chr2:218876906-218909765 Sample_02_1221 Bone marrow KMS11 56 5 773 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_073200094 chr2:218876909-218910620 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 94 9 782 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_111100997 chr2:218876925-218910248 Sample_02_1111 Other HGrC1_SMAD2/3KO 997 6 777 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123800079 chr2:218876966-218909826 Sample_02_1238 Skin MS1_virus_positive 79 9 773 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2,ZNF142,BCS1L,TTLL4,STK36,FEV,CRYBA2
SE_02_050700081 chr2:218877275-218909420 Sample_02_0507 Esophagus TE7_1 81 11 754 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6
SE_02_102500342 chr2:218877289-218898348 Sample_02_1025 Esophagus KYSE150 342 4 475 21 5 340 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_073000140 chr2:218877314-218910613 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 140 10 771 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_148900287 chr2:218877350-218896890 Sample_02_1489 Bone TC-106 287 7 451 20 5 305 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_022700061 chr2:218877482-218909450 Sample_02_0227 Oesophagus TE7 61 11 749 30 5 354 1010 WNT10A,PRKAG3,WNT6
SE_02_148600287 chr2:218877627-218898466 Sample_02_1486 Bone SK-N-MC 287 10 469 21 5 337 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_052100170 chr2:218877783-218910053 Sample_02_0521 Colon SW480 170 5 751 30 5 344 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_153900360 chr2:218878027-218909768 Sample_02_1539 Nasopharyngeal C666-1 360 6 742 30 4 337 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_081900412 chr2:218878210-218910066 Sample_02_0819 Ovary Mucinous ovarian cancer 412 5 736 30 5 327 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_011800357 chr2:218878289-218898218 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 357 4 442 21 4 310 866 WNT10A,PRKAG3,WNT6
SE_00_000800416 chr2:218879108-218898966 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 416 2 434 22 4 306 866 WNT10A,PRKAG3,WNT6
SE_02_094800390 chr2:218879704-218909659 Sample_02_0948 Pharyng Detroit562 390 3 688 27 4 303 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_006300558 chr2:218879763-218910172 Sample_02_0063 Skin Keratinocytes 558 3 691 28 5 300 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_094500090 chr2:218880086-218898209 Sample_02_0945 Brain SF767 90 3 393 18 4 278 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_047900504 chr2:218882471-218909878 Sample_02_0479 Head and neck SCC25 504 4 631 23 2 218 621 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_049200507 chr2:218882474-218909849 Sample_02_0492 Pharyng Detroit 562_LPS 507 4 631 23 2 218 620 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_049100574 chr2:218882492-218909851 Sample_02_0491 Pharyng Detroit 562-Control 574 4 631 23 2 218 617 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_154100872 chr2:218882554-218909450 Sample_02_1541 Nasopharyngeal HNE1 872 5 619 23 2 218 602 LINC01494,WNT10A,WNT6
SE_02_112100836 chr2:218882562-218897620 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 836 8 327 13 2 191 457 WNT10A,LINC01494,WNT6
SE_02_103700600 chr2:218882576-218909864 Sample_02_1037 Pharynx FaDu Control 600 6 630 23 2 218 595 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136500202 chr2:218882579-218909875 Sample_02_1365 Pancreas AsPC1-untreated 202 5 630 23 2 218 595 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_132300378 chr2:218882587-218898378 Sample_02_1323 Colon DLD1_WT 378 4 340 14 2 206 448 WNT10A,LINC01494,WNT6
SE_02_104500506 chr2:218882887-218909413 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 506 8 611 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_094700455 chr2:218882892-218909907 Sample_02_0947 Tongue Cal27 455 4 622 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136600282 chr2:218882947-218909871 Sample_02_1366 Pancreas BxPC3-untreated 282 3 622 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_070500336 chr2:218882985-218909837 Sample_02_0705 Pancreas AsPC1 WT 336 6 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_094600571 chr2:218883011-218909724 Sample_02_0946 Tongue HN12 571 3 619 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_064501734 chr2:218883012-218908974 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1734 5 595 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_072500539 chr2:218883048-218897183 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 539 8 313 13 2 171 448 WNT10A,LINC01494,WNT6
SE_00_004700382 chr2:218883048-218898179 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 382 5 329 14 2 201 448 WNT10A,LINC01494,WNT6
SE_02_071300918 chr2:218883059-218909878 Sample_02_0713 Pancreas BxPC3_sgTP63 918 4 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_071201395 chr2:218883077-218909891 Sample_02_0712 Pancreas BxPC3_sgNEG 1395 4 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_088400755 chr2:218883079-218910185 Sample_02_0884 Colon LoVo 755 4 623 24 3 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_137100768 chr2:218883177-218909925 Sample_02_1371 Pancreas Patu899S-untreated 768 4 619 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_059200215 chr2:218883271-218908988 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 215 6 593 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_016700504 chr2:218883372-218910192 Sample_02_0167 Mammary gland HCC1954_LCC2 504 4 619 24 3 218 592 WNT10A,WNT6,CDK5R2
SE_02_105400598 chr2:218883413-218909564 Sample_02_1054 Esophagus SKGT4 598 4 610 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_105100538 chr2:218883496-218909844 Sample_02_1051 Esophagus Eso26 538 7 613 23 2 217 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_064601286 chr2:218883546-218908864 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1286 5 583 23 2 216 592 LINC01494,WNT10A,WNT6
SE_02_105200330 chr2:218883565-218898463 Sample_02_1052 Esophagus JH-EsoAd1 330 7 326 14 2 204 448 WNT10A,LINC01494,WNT6
SE_02_035800296 chr2:218883567-218909968 Sample_02_0358 Colon LS180 296 3 613 23 2 216 592 WNT10A,WNT6,CDK5R2
SE_02_024100708 chr2:218883618-218909621 Sample_02_0241 Colon V456 708 3 609 23 2 209 592 WNT10A,WNT6
SE_02_072600560 chr2:218883655-218896986 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 560 8 301 13 2 157 448 WNT10A,LINC01494,WNT6
SE_02_152500473 chr2:218883676-218910247 Sample_02_1525 Stomach N87 DMSO 473 3 613 23 3 206 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_036100434 chr2:218883684-218910137 Sample_02_0361 Colon HT29_DMSO 434 3 613 23 3 206 592 WNT10A,WNT6,CDK5R2
SE_02_114100216 chr2:218883726-218897750 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 216 3 308 12 2 180 448 WNT10A,LINC01494,WNT6
SE_02_104100199 chr2:218883996-218909437 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 199 9 597 22 2 201 592 LINC01494,WNT10A,WNT6
SE_02_104200703 chr2:218885345-218909412 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 703 7 573 21 2 193 592 LINC01494,WNT10A,WNT6
SE_02_079500482 chr2:218886769-218909454 Sample_02_0795 Brain 1953 482 5 535 18 2 167 592 LINC01494,WNT10A,WNT6
SE_02_133700130 chr2:218892128-218909449 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 130 5 418 16 1 126 441 LINC01494,WNT10A,WNT6
SE_02_125800652 chr2:218892223-218910233 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 652 2 430 17 2 126 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_133500274 chr2:218892262-218909511 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 274 5 420 16 1 126 441 LINC01494,WNT10A,WNT6
SE_02_048900520 chr2:218892285-218897954 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 520 2 133 7 1 101 297 WNT10A,LINC01494,WNT6
SE_02_137000521 chr2:218892409-218898124 Sample_02_1370 Pancreas Patu8902-untreated 521 2 133 7 1 109 297 WNT10A,LINC01494,WNT6
SE_02_113600485 chr2:218892421-218910097 Sample_02_1136 Bone U2OS-anaphase/telophase 485 2 427 17 2 126 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_071700623 chr2:218892445-218910083 Sample_02_0717 Pancreas HPAFII_GFP_DOX 623 2 426 16 2 122 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_147000755 chr2:218892452-218898109 Sample_02_1470 Umbilical Vein H441 755 2 132 7 1 104 297 WNT10A,LINC01494,WNT6
SE_02_080100585 chr2:218892651-218909389 Sample_02_0801 Brain 2235 585 5 409 16 1 122 432 LINC01494,WNT10A,WNT6
SE_02_126200842 chr2:218892750-218909425 Sample_02_1262 Bone Im-GCT-3504_G34W 842 4 407 16 1 122 409 LINC01494,WNT10A,WNT6
SE_02_070400288 chr2:218892972-218909832 Sample_02_0704 Pancreas HPAFII WT 288 6 409 16 1 104 359 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136900090 chr2:218893012-218909335 Sample_02_1369 Pancreas P4057-untreated 90 5 396 16 1 103 348 LINC01494,WNT10A,WNT6
SE_02_048800452 chr2:218893316-218897643 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 452 2 102 6 1 63 144 WNT10A,LINC01494,WNT6
SE_02_019100162 chr2:218893327-218909579 Sample_02_0191 Stomach SNU719 162 5 401 16 1 89 283 WNT10A,WNT6
Genomic distribution of SEs associated with WNT10A
Genome Browser

The strength of the tissue affected by the gene

Expression of WNT10A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)