SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000167632
Gene: TRAPPC9 Gene type: protein_coding
Strand: - External links:
Genomic region: chr8:139727725-140458579 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_124900038 chr8:139727351-139803727 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 38 29 2535 135 4 92 443 TRAPPC9,KCNK9
SE_02_125200049 chr8:139727655-139803761 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 49 23 2529 135 4 92 443 TRAPPC9,KCNK9
SE_02_125100037 chr8:139728152-139804026 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 37 29 2529 135 4 92 443 TRAPPC9,KCNK9
SE_02_125000194 chr8:139728218-139738906 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 194 6 391 29 0 21 443 TRAPPC9,KCNK9
SE_02_104600027 chr8:139728315-139994430 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 27 94 8986 306 22 310 690 TRAPPC9,KCNK9
SE_02_036200684 chr8:139728491-139738862 Sample_02_0362 Haematopoietic and lymphoid tissue REH 684 2 386 29 0 21 443 TRAPPC9,KCNK9
SE_02_036200485 chr8:139754013-139779656 Sample_02_0362 Haematopoietic and lymphoid tissue REH 485 3 844 39 2 16 0 TRAPPC9,KCNK9
SE_02_075800624 chr8:139754252-139779434 Sample_02_0758 Peripheral blood REH 624 7 828 39 1 16 0 TRAPPC9,KCNK9
SE_02_158600135 chr8:139754365-139779316 Sample_02_1586 Blood SupB15 ACY1035 135 8 824 38 1 16 0 TRAPPC9,KCNK9
SE_02_125000130 chr8:139754479-139803809 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 130 17 1631 70 3 47 0 TRAPPC9,KCNK9
SE_02_003200550 chr8:139813424-139882488 Sample_02_0032 Pancreas pancreatic-islets-M 550 16 2363 20 2 105 0 TRAPPC9,KCNK9
SE_00_000300751 chr8:139830871-139865943 Sample_00_0003 Adrenal gland adrenal-gland_97d 751 5 1272 7 1 54 0 TRAPPC9,KCNK9
SE_02_100800278 chr8:139832087-139841878 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 278 10 349 2 1 17 0 TRAPPC9,KCNK9
SE_02_111500530 chr8:139951022-139969680 Sample_02_1115 Liver HepG2 530 3 559 36 3 16 0 TRAPPC9,KCNK9
SE_02_111300292 chr8:139974879-140005683 Sample_02_1113 Bone U2OS 292 10 1094 17 3 43 73 TRAPPC9,KCNK9
SE_02_111500281 chr8:139982228-139997018 Sample_02_1115 Liver HepG2 281 6 512 7 3 38 73 TRAPPC9,KCNK9
SE_02_104602242 chr8:140014543-140077792 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2242 15 1975 22 4 89 77 TRAPPC9,KCNK9
SE_02_017600508 chr8:140035937-140094537 Sample_02_0176 Peripheral blood LOUCY 508 6 1850 31 2 96 0 TRAPPC9,KCNK9
SE_02_108200261 chr8:140045900-140167631 Sample_02_1082 Retina retina 261 30 3708 60 5 180 327 TRAPPC9
SE_01_003800290 chr8:140047224-140067237 Sample_01_0038 Liver HepG2 290 4 573 7 1 13 0 TRAPPC9,KCNK9
SE_02_134000144 chr8:140072689-140120454 Sample_02_1340 Blood acute myeloid leukemia 144 11 1498 41 2 58 327 TRAPPC9
SE_02_036300161 chr8:140075019-140120089 Sample_02_0363 Haematopoietic and lymphoid tissue 697 161 6 1412 38 2 49 327 TRAPPC9
SE_02_125200236 chr8:140075619-140121866 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 236 18 1424 37 2 59 327 TRAPPC9
SE_02_124900216 chr8:140075701-140119986 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 216 21 1378 37 2 49 327 TRAPPC9
SE_02_125100246 chr8:140075723-140124031 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 246 23 1475 40 2 59 327 TRAPPC9
SE_02_125000222 chr8:140075745-140119536 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 222 17 1368 36 2 49 327 TRAPPC9
SE_02_004700294 chr8:140086068-140172477 Sample_02_0047 Pancreatic endoderm IIDP/donor790 294 12 2618 36 4 126 327 TRAPPC9
SE_02_095800072 chr8:140087107-140101484 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 72 2 448 9 2 23 55 TRAPPC9
SE_02_104601435 chr8:140090557-140171849 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1435 19 2441 31 4 117 327 TRAPPC9
SE_02_139000417 chr8:140105214-140128661 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 417 3 703 19 0 28 0 TRAPPC9
SE_02_158600111 chr8:140107612-140121856 Sample_02_1586 Blood SupB15 ACY1035 111 9 417 14 0 17 0 TRAPPC9
SE_02_158500206 chr8:140107805-140121915 Sample_02_1585 Blood SupB15 DMSO 206 8 412 13 0 17 0 TRAPPC9
SE_02_096100065 chr8:140109268-140142826 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 65 7 1017 18 2 57 0 TRAPPC9
SE_01_005000127 chr8:140139061-140159960 Sample_01_0050 Embryo neural-cell 127 3 642 2 2 43 0 TRAPPC9
SE_02_098200160 chr8:140139568-140177015 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 160 9 1141 3 2 67 0 TRAPPC9
SE_02_003300894 chr8:140140698-140173050 Sample_02_0033 Pancreas pancreatic-islets-F 894 4 972 3 1 61 0 TRAPPC9
SE_02_077502344 chr8:140144522-140156169 Sample_02_0775 Pancreas EndoC-BH1_SE 2344 7 350 2 0 4 0 TRAPPC9
SE_02_139000886 chr8:140149072-140164824 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 886 3 481 2 0 32 0 TRAPPC9
SE_02_012800158 chr8:140210463-140302498 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 158 27 2966 99 6 90 418 TRAPPC9
SE_02_022600223 chr8:140231565-140275891 Sample_02_0226 Blood KOPTK1 223 5 1394 96 4 52 86 TRAPPC9
SE_01_004300289 chr8:140232610-140275275 Sample_01_0043 Blood KOPT-K1 289 4 1340 96 4 51 52 TRAPPC9
SE_02_104601185 chr8:140234124-140322011 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1185 22 2811 100 6 70 417 TRAPPC9
SE_01_002500408 chr8:140250276-140290520 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 408 6 1361 92 5 21 249 TRAPPC9
SE_02_063900070 chr8:140253696-140297110 Sample_02_0639 Blood T-ALL PDX 70 15 1485 82 5 27 255 TRAPPC9
SE_02_125300153 chr8:140276170-140343912 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 153 18 2094 10 2 39 316 TRAPPC9
SE_02_139800777 chr8:140296654-140312377 Sample_02_1398 Bone U2OS_siNC 777 10 531 2 0 9 110 TRAPPC9
SE_02_127700219 chr8:140298967-140323598 Sample_02_1277 Prostate PC3_COMBO 219 9 758 4 0 12 110 TRAPPC9
SE_02_127500578 chr8:140299036-140323671 Sample_02_1275 Prostate PC3_Vorinostat 578 15 758 4 0 12 110 TRAPPC9
SE_02_033400331 chr8:140320050-140366093 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 331 6 1375 25 1 26 72 TRAPPC9
SE_02_033500385 chr8:140336920-140364963 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 385 4 857 20 1 22 72 TRAPPC9
SE_02_033400371 chr8:140389205-140466473 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 371 9 2154 146 2 83 650 TRAPPC9,CHRAC1
SE_02_104300846 chr8:140394658-140470815 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 846 23 2143 146 2 72 650 TRAPPC9,CHRAC1
SE_02_103600780 chr8:140407608-140465150 Sample_02_1036 Mammary gland HCC70_XY018 780 20 1653 122 0 58 580 TRAPPC9,CHRAC1
SE_02_124200109 chr8:140417872-140508744 Sample_02_1242 Skin UISO_virus_negative 109 25 2577 178 2 58 580 TRAPPC9,CHRAC1
SE_02_103500852 chr8:140422427-140470596 Sample_02_1035 Mammary gland HCC70_Vehicle 852 10 1381 104 1 57 580 TRAPPC9,CHRAC1
SE_02_031200327 chr8:140423920-140514982 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 327 14 2613 187 2 58 907 CHRAC1,TRAPPC9
SE_02_104701154 chr8:140429100-140473010 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1154 11 1275 99 1 44 555 TRAPPC9,CHRAC1
SE_02_104901420 chr8:140430436-140470799 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1420 16 1169 93 1 44 555 TRAPPC9,CHRAC1
SE_02_077500154 chr8:140431127-140514296 Sample_02_0775 Pancreas EndoC-BH1_SE 154 18 2392 175 2 44 854 TRAPPC9,CHRAC1
SE_02_092100904 chr8:140435175-140480625 Sample_02_0921 Heart embryonic heart_CS22 904 14 1303 90 1 42 526 TRAPPC9,CHRAC1
SE_02_088901204 chr8:140435178-140480742 Sample_02_0889 Heart left ventricle_LV1183 1204 10 1307 90 1 42 526 TRAPPC9,CHRAC1
SE_02_092400773 chr8:140435627-140480813 Sample_02_0924 Heart fetal heart_PCW10_12569 773 10 1301 90 1 35 502 TRAPPC9,CHRAC1
SE_02_104601347 chr8:140436470-140507516 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1347 19 2029 145 2 35 502 TRAPPC9,CHRAC1
SE_02_036800222 chr8:140436964-140466557 Sample_02_0368 Skeletal muscle NS134 222 5 876 77 0 35 502 TRAPPC9,CHRAC1
SE_01_009400608 chr8:140437182-140480438 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 608 8 1247 82 1 35 502 TRAPPC9,CHRAC1
SE_01_009800989 chr8:140437208-140480773 Sample_01_0098 Heart left ventricle_51y 989 13 1256 82 1 35 502 TRAPPC9,CHRAC1
SE_02_036700294 chr8:140437344-140467714 Sample_02_0367 Skeletal muscle NS129 294 7 896 75 0 35 502 TRAPPC9,CHRAC1
SE_01_009700428 chr8:140437359-140480263 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 428 11 1238 82 1 35 502 TRAPPC9,CHRAC1
SE_02_110800223 chr8:140440479-140508488 Sample_02_1108 Brain SK-N-BE_2_-C 223 16 1947 136 2 29 448 TRAPPC9,CHRAC1
SE_02_003200958 chr8:140444239-140465749 Sample_02_0032 Pancreas pancreatic-islets-M 958 3 621 59 0 29 448 TRAPPC9,CHRAC1
SE_02_127300152 chr8:140444241-140470112 Sample_02_1273 Cervix HeLa 152 5 726 61 0 29 448 TRAPPC9,CHRAC1
SE_00_003200280 chr8:140444277-140465473 Sample_00_0032 Psoas muscle psoas-muscle_30y 280 4 614 59 0 29 448 TRAPPC9,CHRAC1
SE_02_016800364 chr8:140444514-140466426 Sample_02_0168 Prostate LNCaP 364 3 635 60 0 29 448 TRAPPC9,CHRAC1
SE_02_035300262 chr8:140444826-140466205 Sample_02_0353 Colon HT29 262 3 621 60 0 29 448 TRAPPC9,CHRAC1
SE_02_055300311 chr8:140445065-140469964 Sample_02_0553 Other HSSY2 shCt 311 7 699 61 0 29 448 TRAPPC9,CHRAC1
SE_02_143300982 chr8:140445210-140473710 Sample_02_1433 Bone A673 STAG2 null 982 13 802 63 1 29 448 TRAPPC9,CHRAC1
SE_02_074600448 chr8:140445349-140469735 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 448 8 686 61 0 29 448 TRAPPC9,CHRAC1
SE_02_110500415 chr8:140445361-140513324 Sample_02_1105 Brain NBL-S 415 17 1941 145 2 29 735 TRAPPC9,CHRAC1
SE_02_116200705 chr8:140445510-140469790 Sample_02_1162 Stomach YCC11 705 9 687 61 0 29 448 TRAPPC9,CHRAC1
SE_02_066300645 chr8:140446789-140465409 Sample_02_0663 Thyroid TT 645 6 539 56 0 29 448 TRAPPC9,CHRAC1
SE_00_000300716 chr8:140452345-140481232 Sample_00_0003 Adrenal gland adrenal-gland_97d 716 6 792 28 1 8 314 TRAPPC9,CHRAC1
SE_02_004700980 chr8:140452550-140465558 Sample_02_0047 Pancreatic endoderm IIDP/donor790 980 5 358 18 0 8 314 TRAPPC9,CHRAC1
SE_02_155300165 chr8:140455342-140511847 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 165 32 1597 92 2 8 514 TRAPPC9,CHRAC1
SE_02_098200095 chr8:140455424-140479714 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 95 5 667 17 1 8 314 TRAPPC9,CHRAC1
SE_02_024201001 chr8:140455559-140467647 Sample_02_0242 Colon V481 1001 2 334 9 0 8 314 TRAPPC9,CHRAC1
SE_02_032300313 chr8:140455891-140470268 Sample_02_0323 Colon RKO 313 2 380 10 1 8 314 TRAPPC9,CHRAC1
SE_01_003700678 chr8:140456076-140480548 Sample_01_0037 Liver hepatocyte 678 4 671 15 1 8 314 TRAPPC9,CHRAC1
SE_02_035200564 chr8:140456274-140467558 Sample_02_0352 Colon HCT116 564 2 310 5 0 8 314 TRAPPC9,CHRAC1
SE_00_000901012 chr8:140456326-140466201 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 1012 2 278 5 0 8 314 TRAPPC9,CHRAC1
SE_02_036500127 chr8:140456462-140469253 Sample_02_0365 Skeletal muscle NCI0075 127 3 345 6 0 8 314 TRAPPC9,CHRAC1
SE_02_037300299 chr8:140456518-140465574 Sample_02_0373 Skeletal muscle RMS206 299 2 254 4 0 8 314 TRAPPC9,CHRAC1
SE_02_095800589 chr8:140456560-140480605 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 589 9 659 12 1 8 314 TRAPPC9,CHRAC1
SE_02_042100673 chr8:140456708-140465629 Sample_02_0421 Brain BE2C_3 673 2 249 4 0 8 314 TRAPPC9,CHRAC1
SE_02_037200698 chr8:140456730-140465670 Sample_02_0372 Skeletal muscle RMS008 698 2 251 4 0 8 314 TRAPPC9,CHRAC1
SE_02_085600667 chr8:140457057-140480238 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 667 4 635 10 1 8 314 TRAPPC9,CHRAC1
SE_02_035000637 chr8:140457136-140472614 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 637 8 419 6 1 8 314 TRAPPC9,CHRAC1
SE_02_092301155 chr8:140457809-140480664 Sample_02_0923 Heart fetal heart_PCW10_12522 1155 6 628 9 1 4 202 TRAPPC9,CHRAC1
SE_02_148501122 chr8:140458146-140469652 Sample_02_1485 Bone SK-ES-1 1122 5 301 2 0 4 141 TRAPPC9,CHRAC1
SE_02_074500713 chr8:140459435-140465431 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 713 2 171 0 0 4 0 CHRAC1,TRAPPC9
SE_02_058900584 chr8:140460908-140469542 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 584 9 219 2 0 0 0 CHRAC1,TRAPPC9
SE_02_058800628 chr8:140460984-140469590 Sample_02_0588 Cervix HeLa Kyoto_untreated 628 9 216 2 0 0 0 CHRAC1,TRAPPC9
SE_02_070500766 chr8:140463031-140469497 Sample_02_0705 Pancreas AsPC1 WT 766 3 163 2 0 0 0 CHRAC1,TRAPPC9
SE_02_041500498 chr8:140463365-140466192 Sample_02_0415 Stomach YCC22 498 1 78 1 0 0 0 CHRAC1,TRAPPC9
SE_02_119801042 chr8:140463551-140480867 Sample_02_1198 Brain GBM34 1042 9 474 8 1 0 0 CHRAC1,TRAPPC9
SE_02_120501101 chr8:140463552-140480924 Sample_02_1205 Brain NB3 1101 11 475 8 1 0 0 CHRAC1,TRAPPC9
SE_02_119300834 chr8:140463553-140481320 Sample_02_1193 Brain GBM27 834 8 488 8 1 0 0 CHRAC1,TRAPPC9
SE_02_098000338 chr8:140463682-140472409 Sample_02_0980 Brain BT245 338 3 229 4 1 0 0 CHRAC1,TRAPPC9
SE_02_143000893 chr8:140463725-140465878 Sample_02_1430 Blood Kasumi-3_mock-infected 893 1 63 1 0 0 0 CHRAC1,TRAPPC9
SE_02_121100537 chr8:140463749-140480913 Sample_02_1211 Brain GBM21 537 11 470 8 1 0 0 CHRAC1,TRAPPC9
SE_02_118100389 chr8:140463766-140481003 Sample_02_1181 Brain GBM10 389 8 472 8 1 0 0 CHRAC1,TRAPPC9
SE_02_120400581 chr8:140463788-140480788 Sample_02_1204 Brain NB2 581 6 466 8 1 0 0 CHRAC1,TRAPPC9
SE_02_118700606 chr8:140463937-140481648 Sample_02_1187 Brain GBM16 606 11 500 8 1 0 0 CHRAC1,TRAPPC9
SE_02_155400956 chr8:140463939-140481097 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 956 7 475 8 1 0 0 CHRAC1,TRAPPC9
SE_02_048800342 chr8:140463941-140465496 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 342 2 48 0 0 0 0 CHRAC1,TRAPPC9
SE_02_156500469 chr8:140463971-140480658 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 469 6 458 8 1 0 0 CHRAC1,TRAPPC9
SE_02_100900414 chr8:140464025-140480634 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 414 9 456 8 1 0 0 CHRAC1,TRAPPC9
SE_02_121300783 chr8:140464237-140488745 Sample_02_1213 Brain GBM31 783 7 675 19 1 0 0 CHRAC1,TRAPPC9
SE_02_155700373 chr8:140464435-140480852 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 373 7 448 8 1 0 0 CHRAC1,TRAPPC9
SE_02_156300145 chr8:140464564-140480816 Sample_02_1563 Gastrointestinal Stromal GIST-12_SDHC deletion 145 7 444 8 1 0 0 CHRAC1,TRAPPC9
SE_02_100400185 chr8:140465092-140472525 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 185 4 188 4 1 0 0 CHRAC1,TRAPPC9
Genomic distribution of SEs associated with TRAPPC9
Genome Browser

The strength of the tissue affected by the gene

Expression of TRAPPC9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)