Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000138050
Gene: THUMPD2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:39736060-39779267 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139000242 chr2:39602966-39623197 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 242 4 620 20 3 76 99 TMEM178A,THUMPD2
SE_02_024400077 chr2:39713710-39744802 Sample_02_0244 Foreskin foreskin_D11 77 6 985 88 6 96 232 TMEM178,THUMPD2
SE_02_066900507 chr2:39713821-39737709 Sample_02_0669 Prostate prostate cancer_DSG 507 13 776 63 6 85 208 TMEM178A,THUMPD2
SE_02_124100470 chr2:39714064-39743943 Sample_02_1241 Skin MCC26_virus_negative 470 13 948 86 6 91 208 TMEM178A,THUMPD2
SE_02_124000662 chr2:39714113-39743933 Sample_02_1240 Skin MCC13_virus_negative 662 12 945 86 6 91 208 TMEM178A,THUMPD2
SE_01_001900521 chr2:39718013-39744043 Sample_01_0019 Brain and spinal cord astrocyte 521 5 829 80 6 66 108 THUMPD2
SE_01_006600614 chr2:39718075-39739923 Sample_01_0066 Smooth muscle smooth-muscle-cell 614 4 706 65 6 60 104 THUMPD2
SE_02_126500657 chr2:39718646-39744641 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 657 8 827 80 6 71 125 THUMPD2
SE_02_076600920 chr2:39721488-39745439 Sample_02_0766 Ovary PEO1 920 13 750 70 5 53 127 THUMPD2
SE_02_126401463 chr2:39722350-39744105 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1463 6 682 63 5 47 103 THUMPD2
SE_02_126600525 chr2:39722555-39744210 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 525 6 680 62 5 47 104 THUMPD2
SE_02_087600525 chr2:39722884-39743944 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 525 14 666 62 5 47 103 THUMPD2
SE_02_024300430 chr2:39723265-39761080 Sample_02_0243 Foreskin foreskin_HFFs 430 6 1175 117 6 61 248 THUMPD2
SE_02_157100623 chr2:39723568-39756331 Sample_02_1571 Fibroblast Fibroblast cells 623 6 1034 108 6 58 188 THUMPD2
SE_01_011501299 chr2:39725037-39739644 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1299 13 476 44 4 28 103 THUMPD2
SE_02_139000274 chr2:39730009-39739004 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 274 4 289 23 2 18 103 THUMPD2
SE_02_064901246 chr2:39771617-39783503 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1246 4 389 29 1 29 150 THUMPD2
SE_02_064600816 chr2:39772091-39783546 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 816 3 371 27 1 29 135 THUMPD2
SE_02_057601156 chr2:39772133-39797067 Sample_02_0576 Blood HEL_sgLKB1e2 1156 6 822 62 2 57 135 THUMPD2
SE_02_064501702 chr2:39772568-39783523 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1702 3 350 25 1 23 135 THUMPD2
SE_02_139000826 chr2:39775021-39783516 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 826 2 283 14 1 23 135 THUMPD2
SE_02_030100964 chr2:39868221-39883328 Sample_02_0301 Neuroblastoma GIMEN 964 2 551 6 1 18 0 THUMPD2
SE_02_026400387 chr2:39912793-39949388 Sample_02_0264 Skeletal muscle 7250-empty 387 7 1361 42 8 58 70 THUMPD2
SE_02_027400249 chr2:39913536-39960934 Sample_02_0274 Endometriosis hTERT_KD 249 12 1814 63 9 69 70 THUMPD2
SE_01_002500255 chr2:39913621-39941762 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 255 5 1056 33 8 35 70 THUMPD2
SE_02_041900306 chr2:39913854-39954991 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 306 18 1563 52 9 59 70 THUMPD2
SE_02_018200600 chr2:39937551-39955223 Sample_02_0182 melanoma LOX-IMVI 600 6 695 25 4 39 0 THUMPD2
SE_02_017300299 chr2:39989814-40043078 Sample_02_0173 Lung IMR-90_senescent 299 14 2276 105 4 77 0 THUMPD2
SE_02_041900187 chr2:40027474-40043598 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 187 9 637 12 3 19 0 THUMPD2
SE_02_026500546 chr2:40027549-40044120 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 546 5 655 13 3 19 0 THUMPD2
SE_01_006300387 chr2:40027636-40035466 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 387 2 327 8 0 9 0 THUMPD2
SE_02_027400804 chr2:40028752-40045511 Sample_02_0274 Endometriosis hTERT_KD 804 4 637 11 3 18 0 THUMPD2
SE_02_026400486 chr2:40031463-40044076 Sample_02_0264 Skeletal muscle 7250-empty 486 3 478 6 3 13 0 THUMPD2
SE_02_027400337 chr2:40086662-40107007 Sample_02_0274 Endometriosis hTERT_KD 337 2 620 30 6 65 26 THUMPD2
SE_02_126500683 chr2:40092433-40113843 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 683 2 626 34 5 89 182 SLC8A1,SLC8A1-AS1,THUMPD2
SE_02_005400930 chr2:40092462-40114295 Sample_02_0054 Lung IMR-90_DMSO_1 930 4 635 35 5 103 211 SLC8A1,THUMPD2
SE_02_126400392 chr2:40092601-40113884 Sample_02_1264 Bone Im-GCT-4072_G34W KO 392 3 622 34 5 89 185 SLC8A1,SLC8A1-AS1,THUMPD2
SE_02_010700593 chr2:40092698-40107167 Sample_02_0107 Endometrium EEC16 593 1 411 20 4 59 26 THUMPD2
SE_01_005600251 chr2:40092701-40107074 Sample_01_0056 Bone osteoblast 251 2 408 20 4 59 26 THUMPD2
SE_01_001900430 chr2:40092840-40104476 Sample_01_0019 Brain and spinal cord astrocyte 430 2 343 17 3 51 0 THUMPD2
SE_02_042000471 chr2:40092860-40106693 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 471 6 395 20 4 57 26 THUMPD2
SE_02_017500641 chr2:40092896-40106005 Sample_02_0175 Lung IMR-90_Etoposide 641 9 380 20 4 57 26 THUMPD2
SE_02_008800772 chr2:40094286-40104353 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 772 3 291 16 2 42 0 THUMPD2
SE_02_011100907 chr2:40094611-40105055 Sample_02_0111 Ovaries IOE4 907 1 301 16 2 48 16 THUMPD2
SE_02_018200355 chr2:40094755-40107349 Sample_02_0182 melanoma LOX-IMVI 355 2 359 18 3 49 26 THUMPD2
SE_02_009100157 chr2:40095221-40104686 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 157 2 272 15 2 46 0 THUMPD2
SE_02_023000230 chr2:40095425-40104247 Sample_02_0230 Umbilical cord ID60 230 7 251 15 2 40 0 THUMPD2
SE_02_022900369 chr2:40095431-40104514 Sample_02_0229 Umbilical cord ID01 369 8 258 15 2 41 0 THUMPD2
SE_02_005701137 chr2:40394508-40412704 Sample_02_0057 Mammary gland vHMEC 1137 5 696 28 6 57 0 SLC8A1,THUMPD2

Genomic distribution of SEs associated with THUMPD2

The strength of the tissue affected by the gene


Expression of THUMPD2