Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000135316
Gene: SYNCRIP Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:85607779-85644063 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_017201183 chr6:85591789-85646050 Sample_02_0172 Lung IMR-90_quiescent 1183 10 1419 86 0 517 1237 SYNCRIP,SNX14,SNHG5,SNORD50B,SNORD50A
SE_02_098901375 chr6:85610059-85645627 Sample_02_0989 Kidney kidney cortex_WT 1375 9 929 56 0 432 909 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_104701376 chr6:85614859-85646400 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1376 11 869 56 0 266 641 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_104901567 chr6:85616439-85647203 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1567 18 846 54 0 230 550 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_111100959 chr6:85618174-85645682 Sample_02_1111 Other HGrC1_SMAD2/3KO 959 8 755 53 0 230 550 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_134000850 chr6:85620393-85645855 Sample_02_1340 Blood acute myeloid leukemia 850 7 690 50 0 216 481 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_137600870 chr6:85620591-85645522 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 870 6 680 48 0 216 481 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_143100568 chr6:85620815-85645811 Sample_02_1431 Blood T cell 568 4 683 48 0 216 481 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_058400144 chr6:85621185-85645773 Sample_02_0584 Lung H1299 WT 144 9 676 48 0 216 481 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_138200279 chr6:85621288-85645478 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 279 10 668 48 0 216 481 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_103600702 chr6:85625436-85646293 Sample_02_1036 Mammary gland HCC70_XY018 702 8 559 38 0 191 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_138300309 chr6:85628095-85645397 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 309 5 462 34 0 191 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_042700466 chr6:85630481-85645998 Sample_02_0427 Colon HCT116_shPAF1 466 2 412 29 0 190 375 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_067400851 chr6:85630698-85645439 Sample_02_0674 Endometrium E1_FA 851 2 394 28 0 190 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_067201148 chr6:85631004-85645726 Sample_02_0672 Endometrium endometrium cancer_DSG 1148 4 392 28 0 190 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_074701084 chr6:85632675-85645726 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1084 4 351 27 0 190 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_055500484 chr6:85634913-85645713 Sample_02_0555 Other HAP1_WT 484 4 287 21 0 190 375 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_033200399 chr6:85637717-85646543 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 399 1 246 15 0 175 309 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_128001150 chr6:85638109-85645570 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1150 2 213 14 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_070200227 chr6:85638137-85645412 Sample_02_0702 Bone David_TC71 227 2 209 14 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_061700597 chr6:85638891-85645733 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 597 2 196 12 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_133200619 chr6:85638972-85646071 Sample_02_1332 Blood Monomac6_CTRL 619 2 203 12 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_058100145 chr6:85639378-85645788 Sample_02_0581 Blood MOLM13_empty_HG 145 2 179 11 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_057700164 chr6:85639570-85645671 Sample_02_0577 Blood MOLM13_empty 164 2 170 10 0 175 309 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_033300316 chr6:85639981-85646332 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 316 1 166 9 0 175 309 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_057400129 chr6:85640078-85645920 Sample_02_0574 Blood MOLM-13_sgNeg2 129 1 152 9 0 175 307 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_058200167 chr6:85640144-85645886 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 167 2 150 9 0 175 305 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_057500142 chr6:85640188-85645932 Sample_02_0575 Blood MOLM13_sgLKB1e2 142 1 147 9 0 175 299 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_00_002500635 chr6:85640499-85645911 Sample_00_0025 Muscle of leg muscle-of-leg 635 1 143 9 0 171 284 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_033100309 chr6:85640504-85646315 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 309 1 152 9 0 171 284 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_076000848 chr6:85640566-85645066 Sample_02_0760 Ovary BIN-67_SMARCA4 848 1 121 8 0 169 282 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_033500388 chr6:85640590-85646336 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 388 1 152 9 0 169 282 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_01_006000144 chr6:85640603-85644905 Sample_01_0060 Embryo radial-glial-cell 144 1 116 8 0 169 282 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_057800129 chr6:85640669-85645856 Sample_02_0578 Blood MOLM-13_sgSIK3e4 129 1 136 9 0 168 279 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_088400708 chr6:85640737-85645866 Sample_02_0884 Colon LoVo 708 1 130 8 0 168 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_068200524 chr6:85640745-85645951 Sample_02_0682 Blood Kasumi-1 524 1 132 8 0 168 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_145100700 chr6:85640780-85645191 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 700 1 111 7 0 167 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_043100498 chr6:85640797-85645326 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 498 1 114 7 0 167 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_073900992 chr6:85640798-85646664 Sample_02_0739 Blood Nalm6 992 1 146 7 0 167 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_036200689 chr6:85640879-85646164 Sample_02_0362 Haematopoietic and lymphoid tissue REH 689 1 129 7 0 167 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_102900787 chr6:85640892-85646348 Sample_02_1029 Colon HCT116 787 1 134 7 0 167 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_083301075 chr6:85640929-85645253 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1075 1 109 7 0 167 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_010800885 chr6:85640935-85645259 Sample_02_0108 Fallopian tube FT246 885 1 109 7 0 167 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_035500457 chr6:85640936-85645811 Sample_02_0355 Colon HCT15 457 1 121 7 0 167 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_00_002001266 chr6:85640938-85645743 Sample_00_0020 Large intestine large-intestine_108d 1266 1 119 7 0 167 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_039700532 chr6:85640971-85645549 Sample_02_0397 Mammary gland CAL51-MCF-7 532 2 113 7 0 165 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_140500293 chr6:85641015-85644968 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 293 1 96 6 0 158 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_002100401 chr6:85641063-85646308 Sample_01_0021 Skin bipolar-neuron 401 1 126 7 0 157 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_096800425 chr6:85641067-85645084 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 425 1 96 6 0 157 273 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_035800431 chr6:85641078-85645340 Sample_02_0358 Colon LS180 431 1 104 7 0 157 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_033700623 chr6:85641087-85645980 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 623 1 120 7 0 157 273 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_024600323 chr6:85641131-85645097 Sample_02_0246 Mammary gland MCF-7_estradiol 323 1 96 6 0 157 267 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_01_008501111 chr6:85641137-85645682 Sample_01_0085 Stomach stomach 1111 1 112 7 0 157 267 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_025500313 chr6:85641138-85646012 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 313 1 121 7 0 157 266 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_039500571 chr6:85641155-85645770 Sample_02_0395 Mammary gland BT-549 571 1 114 7 0 157 266 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_00_002600350 chr6:85641218-85645823 Sample_00_0026 Muscle of trunk muscle-of-trunk 350 1 115 7 0 153 260 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_146001256 chr6:85641222-85646564 Sample_02_1460 Blood Mutz-3 1256 2 134 7 0 152 260 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_008401300 chr6:85641242-85645166 Sample_01_0084 Spleen spleen 1300 1 98 6 0 152 259 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_00_003900712 chr6:85641249-85645046 Sample_00_0039 Spleen spleen_3y 712 1 96 6 0 152 258 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_00_003601026 chr6:85641249-85645272 Sample_00_0036 Small intestine small-intestine_108days 1026 1 103 7 0 152 258 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_003201010 chr6:85641251-85645549 Sample_02_0032 Pancreas pancreatic-islets-M 1010 1 110 7 0 151 258 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_097300367 chr6:85641276-85645427 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 367 1 106 7 0 148 258 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_083600984 chr6:85641297-85645407 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 984 1 106 7 0 148 257 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_024000793 chr6:85641299-85644988 Sample_02_0240 Colon V429_2 793 1 94 6 0 148 257 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_061000822 chr6:85641300-85645721 Sample_02_0610 Liposarcoma MLS 1765-92 822 1 112 7 0 148 257 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_001700480 chr6:85641302-85644566 Sample_02_0017 Embryo H9_ESC 480 1 83 4 0 143 257 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_136500539 chr6:85641330-85645644 Sample_02_1365 Pancreas AsPC1-untreated 539 1 110 7 0 145 256 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_081900880 chr6:85641346-85645487 Sample_02_0819 Ovary Mucinous ovarian cancer 880 1 108 7 0 143 255 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_00_004300725 chr6:85641351-85645768 Sample_00_0043 Stomach stomach_96d 725 1 113 7 0 143 255 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_00_003300524 chr6:85641364-85645332 Sample_00_0033 Psoas muscle psoas-muscle_3y 524 1 103 7 0 143 254 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_01_006900918 chr6:85641373-85646028 Sample_01_0069 Adrenal gland adrenal-gland 918 1 120 7 0 143 254 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_027400606 chr6:85641375-85645395 Sample_02_0274 Endometriosis hTERT_KD 606 1 105 7 0 143 254 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_061500904 chr6:85641380-85645704 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 904 1 112 7 0 143 252 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_098200229 chr6:85641389-85645373 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 229 1 104 7 0 143 252 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_010700767 chr6:85641395-85645488 Sample_01_0107 Esophagus esophagus squamous epithelium 767 1 107 7 0 143 251 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_101701301 chr6:85641402-85645349 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1301 1 102 7 0 143 251 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_103000590 chr6:85641417-85646515 Sample_02_1030 Colon DKO 590 1 129 7 0 142 249 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_101600672 chr6:85641430-85645381 Sample_02_1016 Embryo H9_Mesendoderm_24h 672 1 102 7 0 141 249 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_085600650 chr6:85641433-85645508 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 650 1 106 7 0 141 249 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_090401427 chr6:85641443-85645451 Sample_02_0904 Heart left ventricle_DCM_LV1028 1427 1 106 7 0 141 248 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_010900944 chr6:85641446-85645645 Sample_01_0109 Colon transverse colon_54y 944 1 108 7 0 141 247 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_097200844 chr6:85641447-85645897 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 844 1 114 7 0 141 247 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_00_000600603 chr6:85641461-85645531 Sample_00_0006 Blood CD14-positive-monocyte 603 1 107 7 0 140 247 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_047701209 chr6:85641494-85645429 Sample_02_0477 Colon intestinal epithelial organoids_139a 1209 1 103 7 0 140 246 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_010100870 chr6:85641517-85645504 Sample_01_0101 Pancreas pancreas_54y 870 1 103 7 0 140 245 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_085701055 chr6:85641527-85645943 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1055 1 113 7 0 140 243 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_095900152 chr6:85641529-85645472 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 152 1 103 7 0 140 243 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_085800930 chr6:85641535-85645349 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 930 1 98 7 0 140 243 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_003700468 chr6:85641542-85646042 Sample_01_0037 Liver hepatocyte 468 1 115 7 0 140 242 SYNCRIP,SNHG5,SNORD50B,SNX14,SNORD50A
SE_02_142700852 chr6:85641571-85645630 Sample_02_1427 Shoulder fibroblast_343 852 1 105 7 0 140 237 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_01_010401000 chr6:85641577-85645447 Sample_01_0104 Lung upper lobe of left lung 1000 1 102 7 0 140 237 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_142600626 chr6:85641579-85645700 Sample_02_1426 Shoulder fibroblast_341 626 1 107 7 0 140 236 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_125400478 chr6:85641631-85645502 Sample_02_1254 Bladder Bladder tumor Basal1 478 1 102 7 0 134 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_145200936 chr6:85641635-85645465 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 936 1 102 7 0 134 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_117200796 chr6:85641668-85645655 Sample_02_1172 Embryo H9 WT 796 1 103 7 0 131 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_126401570 chr6:85641707-85645473 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1570 1 99 7 0 131 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_130800899 chr6:85641737-85645393 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 899 1 96 7 0 129 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_066600310 chr6:85641770-85645400 Sample_02_0666 Prostate RWPE1 Lacz rep1 310 1 96 7 0 129 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_044100681 chr6:85641792-85645781 Sample_02_0441 Bone M112 681 1 103 7 0 129 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_144800494 chr6:85641814-85645347 Sample_02_1448 Adipose SW872_YAP5SA 494 1 91 7 0 129 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_142500486 chr6:85641845-85645340 Sample_02_1425 Shoulder fibroblast_384 486 1 91 7 0 126 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_130900828 chr6:85642082-85645438 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 828 1 90 7 0 102 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5
SE_02_125900920 chr6:85642098-85645564 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 920 1 91 7 0 102 230 SYNCRIP,SNORD50B,SNORD50A,SNX14,SNHG5

Genomic distribution of SEs associated with SYNCRIP

The strength of the tissue affected by the gene


Expression of SYNCRIP