SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000115415
Gene: STAT1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:190908460-191020960 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_023400111 chr2:190862441-191078953 Sample_02_0234 Tonsil Th17 111 42 5455 358 20 670 3389 STAT1,GLS,STAT4
SE_02_122400152 chr2:190880839-191022010 Sample_02_1224 Bone marrow normal plasma cell 152 81 3601 242 5 459 2480 STAT1,GLS
SE_02_104900431 chr2:190945392-191076924 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 431 55 3383 233 18 363 2509 STAT1,STAT4,GLS
SE_02_151400599 chr2:190946288-190985279 Sample_02_1514 Lung Differentiated AT1-like cells 599 9 983 70 2 109 944 STAT1,GLS
SE_02_141600398 chr2:190960308-191021901 Sample_02_1416 Brain SF9402 398 22 1674 146 5 197 1557 STAT1,GLS
SE_02_138700257 chr2:190961720-191065167 Sample_02_1387 Peripheral blood Mac-1_ALK- 257 41 2718 196 12 314 2265 STAT1,STAT4,GLS
SE_02_156900763 chr2:190962038-190985820 Sample_02_1569 Endothelial Endothelial cells 763 7 631 48 2 97 891 STAT1,GLS
SE_01_008400722 chr2:190963937-191067048 Sample_01_0084 Spleen spleen 722 28 2702 194 13 305 2217 STAT1,GLS,STAT4
SE_02_104500147 chr2:190964518-191039428 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 147 24 2006 159 8 236 1881 STAT1,STAT4,GLS
SE_02_094900861 chr2:190966982-190985624 Sample_02_0949 Umbilical artery HUAEC_WT 861 21 489 34 2 68 635 STAT1
SE_01_002600541 chr2:190969948-190985402 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 541 4 417 30 1 67 544 STAT1
SE_02_130901289 chr2:190969968-190984669 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1289 4 398 29 1 67 544 STAT1
SE_02_083100743 chr2:190970154-190985643 Sample_02_0831 Umblical vein HUVECs_TNF0min 743 10 416 30 1 67 560 STAT1
SE_02_095001383 chr2:190970187-190985421 Sample_02_0950 Umbilical vein HUVEC_WT 1383 12 409 30 1 67 530 STAT1
SE_02_058500569 chr2:190970380-190997422 Sample_02_0585 Umbilical vein HUVEC 0hour 569 13 759 60 3 89 750 STAT1
SE_02_062000794 chr2:190970516-190984702 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 794 10 383 29 1 67 501 STAT1
SE_02_104200177 chr2:190972412-191072090 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 177 22 2610 182 14 292 1949 STAT1,STAT4
SE_02_104801856 chr2:190972419-191020776 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1856 11 1328 112 4 158 1180 STAT1
SE_02_104400486 chr2:190974684-190997262 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 486 8 625 45 2 80 704 STAT1
SE_02_138900140 chr2:190982530-191043425 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 140 17 1622 127 6 176 1301 STAT1,STAT4
SE_02_076300574 chr2:190988210-191053087 Sample_02_0763 Podocyte podocyte_DEX 574 9 1706 133 7 181 1098 STAT1,STAT4
SE_02_139200476 chr2:190996516-191039162 Sample_02_1392 Peripheral blood Mac-2A_ALK- 476 13 1108 87 4 127 890 STAT1,STAT4
SE_02_155400700 chr2:190997055-191023481 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 700 6 727 68 1 84 469 STAT1
SE_02_043900487 chr2:190998941-191002481 Sample_02_0439 Bone Hu09 487 1 96 4 0 16 82 STAT1
SE_02_056900494 chr2:191000376-191053065 Sample_02_0569 Periodontal ligament mesenchymal stem cell 494 19 1375 101 6 147 870 STAT1,STAT4
SE_02_063800126 chr2:191001034-191052989 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 126 12 1357 101 6 144 857 STAT1,STAT4
SE_02_002300251 chr2:191001495-191038395 Sample_02_0023 Blood CD8donorC 251 7 962 80 4 101 741 STAT1,STAT4
SE_00_005600736 chr2:191003395-191032503 Sample_00_0056 Sigmoid colon sigmoid colon 3y 736 9 756 70 2 75 504 STAT1,STAT4
SE_02_023300742 chr2:191008009-191031173 Sample_02_0233 Tonsil Th1 742 7 589 55 1 64 385 STAT1,STAT4
SE_02_157300218 chr2:191008493-191033523 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 218 8 643 60 3 76 576 STAT1,STAT4
SE_02_142901028 chr2:191008871-191023900 Sample_02_1429 Blood GM12878_WT 1028 8 415 45 1 55 298 STAT1
SE_02_157100162 chr2:191009682-191052966 Sample_02_1571 Fibroblast Fibroblast cells 162 11 1116 82 6 130 773 STAT1,STAT4
SE_02_156600997 chr2:191009828-191022697 Sample_02_1566 Dermal Dermal fibroblast 997 3 351 40 1 49 265 STAT1
SE_02_060500343 chr2:191009860-191052277 Sample_02_0605 Skin Skin Fibroblast_DMSO 343 12 1084 81 6 125 761 STAT1,STAT4
SE_02_154800525 chr2:191009867-191052785 Sample_02_1548 Gastrointestinal Stromal GIST-226 525 10 1104 82 6 129 761 STAT1,STAT4
SE_02_064400359 chr2:191010064-191021834 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 359 5 317 36 1 38 245 STAT1
SE_02_049901170 chr2:191010153-191051551 Sample_02_0499 Fetal lung IMR90 IR Senescence 1170 16 1053 80 6 116 734 STAT1,STAT4
SE_02_082600624 chr2:191010419-191036588 Sample_02_0826 Stomach gastric tumor 624 11 674 57 3 81 617 STAT1,STAT4
SE_02_132800133 chr2:191010461-191052383 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 133 11 1076 79 6 119 698 STAT1,STAT4
SE_02_012700462 chr2:191010618-191031429 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 462 6 530 52 1 52 297 STAT1,STAT4
SE_02_013100422 chr2:191010618-191031429 Sample_02_0131 Lung 1015_PT 422 6 530 52 1 52 297 STAT1,STAT4
SE_01_000600422 chr2:191010693-191053605 Sample_01_0006 Lung A549_ethanol_1h 422 7 1105 80 6 121 692 STAT1,STAT4
SE_02_048101883 chr2:191010779-191052217 Sample_02_0481 Mammary gland MDA-MB231 1883 15 1060 78 6 113 692 STAT1,STAT4
SE_02_122700438 chr2:191010971-191052288 Sample_02_1227 Bone marrow U266 438 13 1059 78 6 114 692 STAT1,STAT4
SE_02_024400422 chr2:191011069-191021767 Sample_02_0244 Foreskin foreskin_D11 422 3 289 33 1 32 196 STAT1
SE_02_122000247 chr2:191011119-191030977 Sample_02_1220 Bone marrow JJN3 247 8 500 48 1 43 262 STAT1,STAT4
SE_00_005500775 chr2:191011189-191021869 Sample_00_0055 Spleen spleen 34y 775 2 288 32 1 32 196 STAT1
SE_02_045600135 chr2:191011329-191078543 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 135 19 1675 101 14 189 1057 STAT1,STAT4
SE_02_076201350 chr2:191011333-191053160 Sample_02_0762 Podocyte podocyte_CTL 1350 8 1082 77 6 116 692 STAT1,STAT4
SE_02_128000659 chr2:191011370-191022215 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 659 4 295 33 1 33 196 STAT1
SE_02_061500873 chr2:191011403-191021823 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 873 2 282 32 1 32 196 STAT1
SE_02_118500907 chr2:191011474-191032741 Sample_02_1185 Brain GBM14 907 8 545 51 2 51 400 STAT1,STAT4
SE_02_139100420 chr2:191011485-191052269 Sample_02_1391 Peripheral blood FE-PD_ALK- 420 9 1043 76 6 112 692 STAT1,STAT4
SE_02_155600300 chr2:191011569-191026060 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 300 7 388 39 1 37 196 STAT1
SE_02_045400151 chr2:191011667-191079353 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 151 23 1683 102 16 190 1057 STAT1,STAT4
SE_02_138600077 chr2:191011809-191052295 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 77 13 1038 76 6 113 692 STAT1,STAT4
SE_02_059300484 chr2:191011834-191023493 Sample_02_0593 Fetal spleenocytes fetal naive T cells 484 3 328 37 1 37 196 STAT1
SE_02_138800131 chr2:191011840-191052286 Sample_02_1388 Peripheral blood JB6_ALK+ 131 6 1037 76 6 113 692 STAT1,STAT4
SE_03_001400159 chr2:191012028-191054073 Sample_03_0014 Lung A549_dexamethasone_2h 159 4 1084 79 6 116 692 STAT1,STAT4
SE_01_001200520 chr2:191012049-191053360 Sample_01_0012 Lung A549_dexamethasone_1h 520 6 1070 77 6 116 692 STAT1,STAT4
SE_03_000900215 chr2:191012057-191054338 Sample_03_0009 Lung A549_dexamethasone_3h 215 4 1085 79 6 119 692 STAT1,STAT4
SE_02_037200570 chr2:191012108-191021977 Sample_02_0372 Skeletal muscle RMS008 570 2 273 33 1 32 196 STAT1
SE_02_093000316 chr2:191012127-191051252 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 316 26 1001 76 6 109 692 STAT1,STAT4
SE_02_081700808 chr2:191012168-191022828 Sample_02_0817 Ovary Epithelial ovarian cancer 808 4 296 35 1 36 196 STAT1
SE_02_078200291 chr2:191012206-191023234 Sample_02_0782 Blood MEC1 291 1 304 37 1 36 196 STAT1
SE_02_139300343 chr2:191012212-191030895 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 343 7 469 46 1 43 247 STAT1,STAT4
SE_03_001000209 chr2:191012229-191053936 Sample_03_0010 Lung A549_dexamethasone_1h 209 4 1070 78 6 116 692 STAT1,STAT4
SE_03_000400174 chr2:191012235-191053718 Sample_03_0004 Lung A549_dexamethasone_4h 174 4 1066 78 6 116 692 STAT1,STAT4
SE_03_000800168 chr2:191012240-191053965 Sample_03_0008 Lung A549_dexamethasone_7h 168 4 1070 78 6 116 692 STAT1,STAT4
SE_03_000700148 chr2:191012242-191053803 Sample_03_0007 Lung A549_dexamethasone_12h 148 4 1068 78 6 116 692 STAT1,STAT4
SE_02_078300643 chr2:191012766-191023850 Sample_02_0783 Blood MEC2 643 4 312 38 1 37 196 STAT1
SE_02_045500325 chr2:191017656-191070733 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 325 16 1318 76 9 151 769 STAT4,STAT1
SE_03_001300238 chr2:191017865-191053947 Sample_03_0013 Lung A549 238 3 911 56 5 106 496 STAT4,STAT1
SE_02_155200502 chr2:191018008-191053220 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 502 13 898 55 5 106 496 STAT4,STAT1
SE_02_127800385 chr2:191018064-191053363 Sample_02_1278 Chordoma UCH1_DMSO_48h 385 8 899 54 5 106 496 STAT4,STAT1
SE_03_000500260 chr2:191018206-191053490 Sample_03_0005 Lung A549_dexamethasone_0.5h 260 4 898 55 5 106 496 STAT4,STAT1
SE_02_022200208 chr2:191018252-191079725 Sample_02_0222 Blood DU-528 208 7 1510 79 15 180 861 STAT4,STAT1
SE_03_001500191 chr2:191018361-191053900 Sample_03_0015 Lung A549_dexamethasone_8h 191 3 900 55 5 105 496 STAT4,STAT1
SE_02_064501887 chr2:191018581-191021898 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1887 2 89 9 0 21 0 STAT1
SE_02_086700767 chr2:191018586-191053334 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 767 18 886 54 5 105 496 STAT4,STAT1
SE_02_065001084 chr2:191018677-191022282 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 1084 4 96 10 0 21 0 STAT1
SE_02_064901209 chr2:191018801-191021864 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1209 3 79 9 0 20 0 STAT1
SE_02_082000726 chr2:191019003-191024206 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 726 1 148 14 0 23 0 STAT1
SE_02_127900889 chr2:191019716-191052979 Sample_02_1279 Bone Mesenchymal stem cells 889 6 855 53 5 100 496 STAT4,STAT1
SE_02_049400067 chr2:191019871-191052996 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 67 7 854 53 5 100 496 STAT4,STAT1
SE_02_044100683 chr2:191019876-191021864 Sample_02_0441 Bone M112 683 1 63 8 0 16 0 STAT1
SE_02_049500050 chr2:191019883-191052886 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 50 7 849 53 5 100 496 STAT4,STAT1
SE_02_075400421 chr2:191019911-191050135 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 421 5 772 51 5 91 496 STAT4,STAT1
SE_02_075200578 chr2:191019995-191052418 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 578 7 833 52 5 97 496 STAT4,STAT1
SE_02_002400366 chr2:191020065-191078687 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 366 21 1452 76 14 173 861 STAT4,STAT1
SE_02_150201065 chr2:191020206-191052295 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1065 10 818 50 5 94 496 STAT4,STAT1
SE_02_003801140 chr2:191020211-191052401 Sample_02_0038 Embryo DE 1140 5 822 50 5 94 496 STAT4,STAT1
SE_02_065400204 chr2:191020448-191021337 Sample_02_0654 Tracheobronchial epithelial HTBE_H5N1_06h 204 1 30 3 0 5 0 STAT1
SE_02_124100849 chr2:191020498-191052367 Sample_02_1241 Skin MCC26_virus_negative 849 5 812 49 5 87 496 STAT4,STAT1
SE_02_156600947 chr2:191036547-191052353 Sample_02_1566 Dermal Dermal fibroblast 947 7 403 22 3 38 85 STAT4,STAT1
SE_03_001600311 chr2:191036693-191054028 Sample_03_0016 Lung A549_dexamethasone_6h 311 1 442 24 3 41 85 STAT4,STAT1
SE_02_026400640 chr2:191036927-191052470 Sample_02_0264 Skeletal muscle 7250-empty 640 3 398 21 3 39 85 STAT4,STAT1
SE_02_060600980 chr2:191037070-191052310 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 980 5 389 21 3 38 85 STAT4,STAT1
SE_03_001100283 chr2:191037190-191053620 Sample_03_0011 Lung A549_dexamethasone_5h 283 1 423 23 3 41 85 STAT4,STAT1
SE_01_001800606 chr2:191037246-191052445 Sample_01_0018 Submandibular Salivary Gland ACC112 606 4 390 21 3 39 85 STAT4,STAT1
SE_01_005600632 chr2:191037506-191052805 Sample_01_0056 Bone osteoblast 632 2 398 22 3 41 85 STAT4,STAT1
SE_02_023100552 chr2:191037872-191070988 Sample_02_0231 Tonsil ILC1 552 7 823 42 7 86 358 STAT4,STAT1
SE_02_113300971 chr2:191037939-191052272 Sample_02_1133 Liver Hepatic stellate cells 971 4 370 21 3 35 85 STAT4,STAT1
SE_02_152300410 chr2:191038239-191052936 Sample_02_1523 Lung A549 DMSO 410 4 386 21 2 39 85 STAT4,STAT1
SE_01_004300533 chr2:191051104-191071349 Sample_01_0043 Blood KOPT-K1 533 3 498 22 5 52 273 STAT4,STAT1
SE_02_045700775 chr2:191061449-191078636 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 775 4 394 17 7 58 272 STAT4,STAT1
Genomic distribution of SEs associated with STAT1
Genome Browser

The strength of the tissue affected by the gene

Expression of STAT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)