SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000160408
Gene: ST6GALNAC6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:127885321-127905408 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_031000543 chr9:127873366-127911125 Sample_02_0310 Neuroblastoma SJNB8 543 4 1018 71 3 0 2013 AK1,ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,ENG,DPM2
SE_00_002600849 chr9:127873385-127905685 Sample_00_0026 Muscle of trunk muscle-of-trunk 849 6 808 58 2 0 1653 AK1,ST6GALNAC6,FAM102A,PIP5KL1,ENG,ST6GALNAC4,DPM2
SE_02_084000997 chr9:127882219-127919922 Sample_02_0840 Embryo hNPCs_R1159Q/+ 997 6 1023 70 4 0 2308 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_124900450 chr9:127882712-127920758 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 450 13 1026 72 4 0 2308 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_125200449 chr9:127882909-127919593 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 449 12 999 68 4 0 2308 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_108000735 chr9:127884785-127919992 Sample_02_1080 Muscle JR1 shCtrl 735 5 964 68 4 0 2308 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_086500359 chr9:127893445-127923960 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 359 9 840 60 4 0 1826 PIP5KL1,ST6GALNAC6,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_077900136 chr9:127894494-127919098 Sample_02_0779 Lymphoma U2932 136 7 709 52 4 0 1591 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_046500881 chr9:127895707-127900293 Sample_02_0465 Adipose subcutaneous adipocytes 881 1 131 14 1 0 505 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,AK1
SE_02_086200478 chr9:127896451-127921554 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 478 9 708 53 4 0 1484 PIP5KL1,ST6GALNAC6,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_034200813 chr9:127896468-127919686 Sample_02_0342 Liver HSPCs_F0 813 4 667 51 4 0 1438 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_01_010701062 chr9:127896574-127920471 Sample_01_0107 Esophagus esophagus squamous epithelium 1062 6 672 50 4 0 1429 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_032100333 chr9:127896646-127919020 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 333 4 641 47 4 0 1429 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_02_086400400 chr9:127896769-127921477 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 400 8 691 51 4 0 1458 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_061700866 chr9:127896915-127918581 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 866 4 624 47 4 0 1429 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_142800777 chr9:127897049-127924445 Sample_02_1428 Shoulder fibroblast_316 777 9 753 58 4 0 1629 PIP5KL1,ST6GALNAC6,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_002400458 chr9:127897208-127908151 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 458 5 298 26 2 0 578 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_02_147200908 chr9:127897474-127902775 Sample_02_1472 Fetal lung IMR-90 908 1 133 15 2 0 308 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_142500217 chr9:127897483-127924297 Sample_02_1425 Shoulder fibroblast_384 217 10 743 57 4 0 1523 ST6GALNAC6,PIP5KL1,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_055600572 chr9:127897486-127905485 Sample_02_0556 iPSCs BOFS hiPSC cl1 572 2 202 21 2 0 405 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_156601074 chr9:127897510-127924688 Sample_02_1566 Dermal Dermal fibroblast 1074 8 754 57 4 0 1508 ST6GALNAC6,PIP5KL1,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_01_009900813 chr9:127897517-127913448 Sample_01_0099 Colon transverse colon 813 4 496 42 4 0 912 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_086600465 chr9:127897531-127921452 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 465 8 677 50 4 0 1320 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_098901443 chr9:127897549-127921911 Sample_02_0989 Kidney kidney cortex_WT 1443 7 683 50 4 0 1415 ST6GALNAC6,PIP5KL1,ST6GALNAC4,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_000800469 chr9:127898376-127908994 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 469 2 312 30 3 0 537 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_02_115500395 chr9:127898462-127919704 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 395 5 611 45 4 0 1194 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_115400431 chr9:127898539-127919504 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 431 4 603 42 3 0 1194 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_002700293 chr9:127898625-127908415 Sample_00_0027 Blood natural-killer-cell 293 3 276 25 2 0 448 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_00_000900524 chr9:127898662-127908553 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 524 3 280 25 2 0 472 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_00_004400593 chr9:127898676-127908668 Sample_00_0044 Cord blood T-cell 593 3 283 24 2 0 506 ST6GALNAC4,ST6GALNAC6,FAM102A,PIP5KL1,AK1,ENG,DPM2
SE_02_075000301 chr9:127901116-127919660 Sample_02_0750 Lymphoma Rec-1_GSI 301 10 553 36 3 0 1017 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_075100372 chr9:127901156-127919224 Sample_02_0751 Lymphoma Rec-1_WO 372 10 543 34 3 0 1017 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_078300456 chr9:127901195-127917127 Sample_02_0783 Blood MEC2 456 7 498 33 3 0 984 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_121800734 chr9:127901338-127915919 Sample_02_1218 Bone marrow Daudi 734 8 474 32 2 0 750 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_005500824 chr9:127901568-127920187 Sample_00_0055 Spleen spleen 34y 824 8 550 35 2 0 1017 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_078200261 chr9:127901705-127918721 Sample_02_0782 Blood MEC1 261 5 513 33 2 0 1017 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_078400950 chr9:127901833-127917088 Sample_02_0784 Blood OSU-CLL 950 6 478 32 2 0 973 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_130100369 chr9:127902681-127910914 Sample_02_1301 Blood PER-117 369 4 279 19 1 0 478 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_003900952 chr9:127902973-127908589 Sample_00_0039 Spleen spleen_3y 952 1 180 13 1 0 307 ST6GALNAC4,FAM102A,PIP5KL1,AK1,ENG,DPM2,ST6GALNAC6
SE_02_104900753 chr9:127903011-127909387 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 753 1 232 17 1 0 360 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_000500567 chr9:127903189-127907831 Sample_00_0005 Blood B-cell 567 1 142 8 0 0 138 FAM102A,PIP5KL1,AK1,ENG,ST6GALNAC4,DPM2,ST6GALNAC6
SE_02_081700483 chr9:127903204-127918414 Sample_02_0817 Ovary Epithelial ovarian cancer 483 5 467 28 2 0 1017 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_139300743 chr9:127903251-127911853 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 743 4 294 17 2 0 478 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_00_004700471 chr9:127903301-127907534 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 471 1 119 6 0 0 118 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_059300466 chr9:127903339-127908193 Sample_02_0593 Fetal spleenocytes fetal naive T cells 466 3 149 8 0 0 223 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
SE_02_002300609 chr9:127903339-127908445 Sample_02_0023 Blood CD8donorC 609 5 161 10 1 0 278 ST6GALNAC4,FAM102A,PIP5KL1,AK1,ENG,DPM2,ST6GALNAC6
SE_02_104700535 chr9:127903472-127909326 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 535 1 211 14 1 0 360 ST6GALNAC6,ST6GALNAC4,PIP5KL1,ENG,MIR4672,DPM2,FAM102A,AK1
Genomic distribution of SEs associated with ST6GALNAC6
Genome Browser

The strength of the tissue affected by the gene

Expression of ST6GALNAC6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)