SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000212304
Gene: SNORD12 Gene type: snoRNA
Strand: + External links:
Genomic region: chr20:49280683-49280772 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_029400557 chr20:49274785-49292996 Sample_02_0294 Pancreatic L3-6_DMSO 557 1 635 96 2 44 563 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_017700390 chr20:49274994-49289966 Sample_02_0177 Urinary bladder J82 390 1 515 75 2 44 563 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_021200031 chr20:49275016-49292442 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 31 1 596 89 2 44 563 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_153000912 chr20:49275091-49289617 Sample_02_1530 Peripheral blood neutrophils_0BA0X 912 1 492 72 2 44 563 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_153200317 chr20:49275223-49288081 Sample_02_1532 Mammary gland MCF10A 317 1 440 62 2 44 497 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_040100264 chr20:49275230-49288995 Sample_02_0401 Mammary gland SUM159PT-T47D 264 1 470 69 2 44 513 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_01_001200219 chr20:49275231-49288429 Sample_01_0012 Lung A549_dexamethasone_1h 219 1 451 65 2 44 497 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_113800346 chr20:49275356-49288136 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 346 1 442 63 2 44 497 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_01_004600298 chr20:49275416-49291725 Sample_01_0046 Mammary gland MCF-7 298 1 560 82 2 44 563 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_040300118 chr20:49275698-49291521 Sample_02_0403 Mammary gland T-47D_untreat 118 1 543 79 2 44 546 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_000200368 chr20:49275904-49290707 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 368 1 516 77 2 40 521 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_068300081 chr20:49276092-49289615 Sample_02_0683 Lung DMS114 81 1 464 67 2 40 510 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_040400247 chr20:49276288-49291508 Sample_02_0404 Mammary gland ZR-75-1_2 247 1 531 78 2 39 510 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_032800053 chr20:49276818-49293674 Sample_02_0328 Embryo H9_naive 53 1 604 91 2 38 510 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_101700790 chr20:49277129-49290297 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 790 1 478 73 2 34 510 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_016800431 chr20:49277302-49290785 Sample_02_0168 Prostate LNCaP 431 1 492 76 2 34 510 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_005000129 chr20:49277342-49284016 Sample_02_0050 Skin BJ 129 1 268 42 1 34 444 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_101600723 chr20:49277349-49284882 Sample_02_1016 Embryo H9_Mesendoderm_24h 723 1 286 43 1 34 444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_033001054 chr20:49277415-49284511 Sample_02_0330 Endoderm MHG 1054 1 278 43 1 34 444 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_003600245 chr20:49277579-49293521 Sample_02_0036 Embryo H7 245 1 592 88 2 34 510 SNORD12,SNORD12C,SNORD12B,ZNFX1,NCRNA00275
SE_02_116100208 chr20:49277600-49283538 Sample_02_1161 Embryo H1_shZNF587 208 1 249 36 1 34 444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_157200437 chr20:49277616-49284545 Sample_02_1572 iPSCs FiPSC 437 1 276 42 1 34 444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_075400978 chr20:49277792-49284177 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 978 1 265 41 1 34 444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_157000933 chr20:49277814-49284487 Sample_02_1570 iPSCs EiPSC 933 1 270 41 1 34 444 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_116000575 chr20:49277857-49283848 Sample_02_1160 Embryo H1_shLuc 575 1 254 38 1 34 431 SNORD12B,ZFAS1,SNORD12,SNORD12C,ZNFX1
SE_02_123300489 chr20:49278229-49282963 Sample_02_1233 Lung PC9_miR-4497 mimic 489 1 209 30 1 19 321 SNORD12C,ZFAS1,SNORD12,SNORD12B,ZNFX1
SE_02_006700397 chr20:49278326-49288494 Sample_02_0067 Embryo AzH-G2/M 397 1 387 59 2 17 288 SNORD12,SNORD12C,NCRNA00275,SNORD12B,ZNFX1
SE_02_006500271 chr20:49278326-49295197 Sample_02_0065 Embryo KO2-Late_G1 271 2 614 90 2 17 354 SNORD12,SNORD12C,NCRNA00275,SNORD12B,ZNFX1
SE_02_116200255 chr20:49278344-49282969 Sample_02_1162 Stomach YCC11 255 1 207 30 1 17 283 SNORD12C,ZFAS1,SNORD12,SNORD12B,ZNFX1
SE_02_006400285 chr20:49278421-49289911 Sample_02_0064 Embryo DN-Early_G1 285 2 431 63 2 15 330 SNORD12,SNORD12C,NCRNA00275,SNORD12B,ZNFX1
SE_02_156700891 chr20:49278591-49284509 Sample_02_1567 iPSCs CiPSC 891 1 242 35 1 10 231 ZFAS1,SNORD12C,SNORD12,SNORD12B,ZNFX1
SE_02_040600458 chr20:49278618-49283011 Sample_02_0406 Mammary gland ZR-75-30_parental 458 1 193 26 1 10 226 SNORD12,SNORD12B,NCRNA00275,SNORD12C,ZNFX1
SE_02_137200359 chr20:49278629-49282432 Sample_02_1372 Pancreas PSN1-untreated 359 1 172 23 1 10 226 ZFAS1,SNORD12C,SNORD12,SNORD12B,ZNFX1
SE_02_113100749 chr20:49278644-49282710 Sample_02_1131 Pancreas T3M4 wt 749 1 180 24 1 10 223 ZFAS1,SNORD12C,SNORD12,SNORD12B,ZNFX1
SE_00_001300312 chr20:49282393-49291511 Sample_00_0013 Embryo H9 312 4 302 46 1 0 66 NCRNA00275,SNORD12B,SNORD12,ZNFX1,SNORD12C
SE_02_044300126 chr20:49323952-49405444 Sample_02_0443 Bone MG63 126 42 2150 191 18 155 1061 KCNB1,SNORD12C,ZFAS1,SNORD12B,SNORD12,ZNFX1
SE_02_039500745 chr20:49335015-49352305 Sample_02_0395 Mammary gland BT-549 745 4 430 34 2 52 0 SNORD12
SE_02_108100404 chr20:49336871-49362758 Sample_02_1081 Muscle CTR shCtrl 404 5 692 50 2 52 0 SNORD12
SE_02_087600374 chr20:49337008-49356799 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 374 4 506 34 2 52 0 SNORD12
SE_02_074100364 chr20:49337073-49357745 Sample_02_0741 Muscle RH30 364 5 538 41 2 52 0 SNORD12
SE_02_087700306 chr20:49337144-49362714 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 306 9 680 49 2 52 0 SNORD12
SE_00_002600916 chr20:49337244-49357720 Sample_00_0026 Muscle of trunk muscle-of-trunk 916 3 532 40 1 52 0 SNORD12
SE_01_011500418 chr20:49337520-49357479 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 418 7 514 37 1 52 0 SNORD12,ZNFX1
SE_02_111300177 chr20:49337576-49352728 Sample_02_1113 Bone U2OS 177 6 377 28 1 52 0 SNORD12
SE_02_139800763 chr20:49339025-49353887 Sample_02_1398 Bone U2OS_siNC 763 8 375 28 0 52 0 SNORD12
SE_02_139900435 chr20:49339527-49352054 Sample_02_1399 Bone U2OS_siMLL3.1 435 8 305 21 0 52 0 SNORD12
SE_02_113400235 chr20:49339720-49348530 Sample_02_1134 Bone U2OS-interphase 235 3 213 17 0 30 0 SNORD12
SE_02_095600621 chr20:49339916-49401711 Sample_02_0956 Brain IDH1_2658 621 17 1597 124 2 154 1061 KCNB1,SNORD12
SE_02_006900556 chr20:49340179-49348242 Sample_02_0069 Brain SF268 556 2 197 15 0 30 0 SNORD12
SE_02_061001570 chr20:49340263-49348452 Sample_02_0610 Liposarcoma MLS 1765-92 1570 3 199 15 0 30 0 SNORD12
SE_02_028100485 chr20:49341274-49349481 Sample_02_0281 Bone U2OS 485 1 197 12 0 30 0 SNORD12
SE_02_037000294 chr20:49341396-49348750 Sample_02_0370 Skeletal muscle RH4 294 1 177 12 0 30 0 SNORD12
SE_02_111500500 chr20:49342016-49349124 Sample_02_1115 Liver HepG2 500 1 177 11 0 30 0 SNORD12
SE_02_064200794 chr20:49342205-49350440 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 794 3 198 11 0 30 0 SNORD12
SE_02_041700113 chr20:49343217-49358378 Sample_02_0417 Embryo H9_Null 113 3 424 30 0 52 0 SNORD12
SE_02_089601174 chr20:49381296-49428632 Sample_02_0896 Heart left ventricle_LV1294 1174 11 1324 144 23 45 0 KCNB1,SNORD12
SE_02_053300506 chr20:49388756-49452518 Sample_02_0533 Blood vessel Circle of Willis_54y 506 24 1783 147 25 68 0 KCNB1,SNORD12
SE_02_053400684 chr20:49395556-49428251 Sample_02_0534 Blood vessel Circle of Willis_60y 684 15 939 102 22 33 0 KCNB1,SNORD12
Genomic distribution of SEs associated with SNORD12
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)