SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000167565
Gene: SERTAD3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:40440844-40444335 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_047600094 chr19:40416983-40464412 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 94 8 1274 128 1 187 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,MIR6796,HIPK4
SE_02_064800248 chr19:40417067-40464471 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 248 6 1271 128 1 187 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,MIR6796,HIPK4
SE_02_065200298 chr19:40417115-40464487 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 298 7 1272 128 1 187 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,MIR6796,HIPK4
SE_02_109000129 chr19:40417310-40465748 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 129 14 1301 127 1 206 1325 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,MIR6796,HIPK4
SE_02_076500181 chr19:40419693-40463947 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 181 14 1184 121 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,MIR6796,HIPK4
SE_02_032200486 chr19:40420344-40454387 Sample_02_0322 Colon Caco-2 486 4 947 95 1 149 1069 SERTAD1,SERTAD3,BLVRB,SPTBN4,PRX,HIPK4
SE_02_016800293 chr19:40420503-40463981 Sample_02_0168 Prostate LNCaP 293 5 1171 120 1 175 1248 SERTAD1,SERTAD3,BLVRB,SPTBN4,PRX,HIPK4
SE_02_066900169 chr19:40420525-40453930 Sample_02_0669 Prostate prostate cancer_DSG 169 7 929 93 1 149 1069 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_017000538 chr19:40420611-40463528 Sample_02_0170 Prostate LNCaP_R1881_DOX 538 7 1163 118 1 175 1248 SERTAD1,SERTAD3,BLVRB,SPTBN4,PRX,HIPK4
SE_02_048000450 chr19:40420721-40464507 Sample_02_0480 Gingival epithelial HGEP 450 8 1177 121 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_140700244 chr19:40420742-40461967 Sample_02_1407 Prostate LNCaP_R1881 4h 244 7 1118 112 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_140800279 chr19:40420771-40463507 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 279 7 1156 118 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_065000065 chr19:40420777-40453945 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 65 7 920 91 1 149 1069 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_129900595 chr19:40420781-40461758 Sample_02_1299 Liver liver 595 6 1111 110 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_140600222 chr19:40420806-40454385 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 222 6 935 93 1 149 1069 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_140900278 chr19:40420806-40461973 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 278 5 1116 111 1 175 1248 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_075700599 chr19:40420836-40453374 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 599 4 904 89 1 149 1069 BLVRB,SERTAD1,SERTAD3,SPTBN4,PRX,HIPK4
SE_02_082700759 chr19:40433160-40448100 Sample_02_0827 Stomach normal gastric 759 4 409 50 0 80 563 BLVRB,SERTAD3,SPTBN4,PRX,SERTAD1,HIPK4
SE_01_001200532 chr19:40440849-40446591 Sample_01_0012 Lung A549_dexamethasone_1h 532 1 152 19 0 49 466 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_02_058400192 chr19:40440973-40445692 Sample_02_0584 Lung H1299 WT 192 1 133 16 0 47 450 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_01_003701192 chr19:40442009-40446863 Sample_01_0037 Liver hepatocyte 1192 1 124 13 0 25 238 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_02_003900561 chr19:40442340-40447093 Sample_02_0039 Embryo AFG 561 1 124 12 0 25 203 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_02_081601871 chr19:40442372-40446030 Sample_02_0816 Ovary Clear cell ovarian cancer 1871 1 100 10 0 25 201 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_02_004800906 chr19:40443205-40446982 Sample_02_0048 Embryo endodermal CyT49_HE 906 1 99 10 0 24 159 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
SE_02_033000618 chr19:40443261-40447087 Sample_02_0330 Endoderm MHG 618 1 99 10 0 23 159 SERTAD3,SPTBN4,PRX,SERTAD1,BLVRB
Genomic distribution of SEs associated with SERTAD3
Genome Browser

The strength of the tissue affected by the gene

Expression of SERTAD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)