SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000143751
Gene: SDE2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:225982702-225999343 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103601833 chr1:225958780-226008696 Sample_02_1036 Mammary gland HCC70_XY018 1833 16 1384 88 0 60 636 SDE2,PYCR2,MIR6741,LEFTY2
SE_02_122700772 chr1:225961972-226002867 Sample_02_1227 Bone marrow U266 772 15 1169 70 0 54 636 SDE2,PYCR2,MIR6741,LEFTY2
SE_02_104901073 chr1:225962351-226008137 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1073 28 1266 81 0 60 636 SDE2,PYCR2,MIR6741,LEFTY2
SE_02_122900392 chr1:225968838-226007267 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 392 17 1026 57 0 60 636 SDE2,PYCR2,MIR6741,LEFTY2,H3F3A,TMEM63A,RP4-559A3.7
SE_02_134000494 chr1:225975383-226015263 Sample_02_1340 Blood acute myeloid leukemia 494 16 1033 67 0 60 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_057600405 chr1:225976779-226035793 Sample_02_0576 Blood HEL_sgLKB1e2 405 17 1477 112 0 94 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_058000433 chr1:225977197-226015661 Sample_02_0580 Blood HEL_sgSIK3e4 433 14 1005 67 0 60 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_104301903 chr1:225977387-226017463 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1903 10 1033 71 0 61 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_045900479 chr1:225977429-226015296 Sample_02_0459 Blood ME-1_DMSO_6h 479 11 976 64 0 60 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_057900396 chr1:225977500-226015639 Sample_02_0579 Blood HEL_sgNeg2 396 9 986 67 0 60 636 SDE2,H3F3A,H3F3AP4,LEFTY2
SE_02_143100105 chr1:225977525-226004968 Sample_02_1431 Blood T cell 105 4 707 37 0 60 636 SDE2,LEFTY2
SE_02_149201290 chr1:225977554-226003901 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1290 5 691 36 0 60 636 SDE2,LEFTY2
SE_02_111200901 chr1:225977839-226004806 Sample_02_1112 T lymphocyte THP-6 T-ALL 901 8 693 35 0 60 636 SDE2,LEFTY2
SE_02_046000429 chr1:225980099-226004490 Sample_02_0460 Blood ME-1_I-10-49_6h 429 6 616 29 0 60 636 SDE2,LEFTY2
SE_02_146800682 chr1:225986342-226004092 Sample_02_1468 Blood HUDEP-2_WT 682 3 435 26 0 53 369 SDE2,LEFTY2
SE_02_146700271 chr1:225986721-226004049 Sample_02_1467 Blood HUDEP-2_LRFKO 271 4 427 26 0 53 369 SDE2,LEFTY2
SE_02_139400153 chr1:225986980-226002797 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 153 5 398 23 0 47 369 SDE2,LEFTY2
SE_02_103300421 chr1:225987936-226009637 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 421 7 546 41 0 52 345 SDE2,LEFTY2,H3F3A
SE_01_010401096 chr1:225990731-226004069 Sample_01_0104 Lung upper lobe of left lung 1096 5 317 22 0 52 261 SDE2,LEFTY2
SE_02_082601335 chr1:225990742-226004060 Sample_02_0826 Stomach gastric tumor 1335 5 317 22 0 52 261 SDE2,LEFTY2
SE_02_082000600 chr1:225990803-226003831 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 600 2 312 21 0 52 261 SDE2,LEFTY2
SE_02_073900686 chr1:225990812-226004472 Sample_02_0739 Blood Nalm6 686 6 322 22 0 52 261 SDE2,LEFTY2
SE_02_133200431 chr1:225994003-226035248 Sample_02_1332 Blood Monomac6_CTRL 431 7 971 89 0 81 155 SDE2,H3F3A,H3F3AP4
SE_04_000100288 chr1:225994059-226010100 Sample_04_0001 Blood heat shocked K562 288 2 387 31 0 47 155 SDE2,H3F3A
SE_04_000200245 chr1:225994089-226010173 Sample_04_0002 Blood cold shocked K562 245 2 387 31 0 47 155 SDE2,H3F3A
SE_02_111600181 chr1:225995483-226006326 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 181 4 241 15 0 47 127 SDE2
SE_02_134300062 chr1:225995603-226003846 Sample_02_1343 Leukophereses leukophereses_p195 62 1 193 12 0 47 124 SDE2
SE_02_113000265 chr1:225995606-226006808 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 265 4 253 16 0 47 124 SDE2
SE_02_103400199 chr1:225995689-226004315 Sample_02_1034 Blood AML cell 199 1 196 11 0 47 124 SDE2
SE_02_146000750 chr1:225995842-226004219 Sample_02_1460 Blood Mutz-3 750 3 195 11 0 47 124 SDE2
SE_02_098800523 chr1:225995852-226004023 Sample_02_0988 Blood K562_EPZ 523 3 192 11 0 47 124 SDE2
SE_02_098700500 chr1:225995875-226004552 Sample_02_0987 Blood K562_Control_1 500 4 200 11 0 47 124 SDE2
SE_02_109600657 chr1:225995890-226003896 Sample_02_1096 Blood CD34 Erythroid cells_Don003 657 2 189 11 0 47 124 SDE2
SE_02_061700136 chr1:225995892-226036435 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 136 4 958 87 0 81 124 SDE2,H3F3A,H3F3AP4
SE_02_109900410 chr1:225995936-226009619 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 410 11 334 26 0 47 124 SDE2,H3F3A
SE_02_054500232 chr1:225996039-226010669 Sample_02_0545 Bone marrow K562 WT 232 6 358 29 0 47 124 SDE2,H3F3A
SE_02_135000604 chr1:225996231-226004377 Sample_02_1350 Leukophereses leukophereses_p456 604 3 188 10 0 47 124 SDE2
SE_02_145800338 chr1:225996535-226007420 Sample_02_1458 Pancreas THP1+PANC1_shNC 338 2 247 16 0 47 124 SDE2
SE_02_097200565 chr1:225996583-226004202 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 565 1 177 10 0 47 124 SDE2
SE_02_143000036 chr1:225996676-226004125 Sample_02_1430 Blood Kasumi-3_mock-infected 36 1 174 10 0 47 124 SDE2
SE_02_133100662 chr1:225996738-226015602 Sample_02_1331 Blood Molm13_CTRL 662 4 463 40 0 47 124 SDE2,H3F3A,H3F3AP4
SE_02_130800566 chr1:225996854-226003560 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 566 2 154 7 0 47 124 SDE2
SE_02_130900903 chr1:225996872-226003349 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 903 2 151 7 0 47 124 SDE2
SE_02_134900458 chr1:225997048-226003461 Sample_02_1349 Leukophereses leukophereses_p411 458 2 149 7 0 47 124 SDE2
SE_02_081601609 chr1:225997289-226003838 Sample_02_0816 Ovary Clear cell ovarian cancer 1609 2 158 9 0 47 124 SDE2
SE_02_152900751 chr1:225997788-226004410 Sample_02_1529 Peripheral blood neutrophils_0BC75 751 1 155 9 0 47 124 SDE2,EPHX1,TMEM63A,ACBD3
SE_02_084100462 chr1:225997814-226041080 Sample_02_0841 Blood THP-1_untr 462 12 1038 96 1 81 124 SDE2,H3F3A,H3F3AP4,EPHX1,PYCR2,ACBD3
SE_02_092800234 chr1:225997817-226005755 Sample_02_0928 Peripheral blood neutrophils_Ecoli 234 1 187 12 0 47 124 SDE2,EPHX1,TMEM63A,ACBD3
SE_02_153000708 chr1:225998034-226005322 Sample_02_1530 Peripheral blood neutrophils_0BA0X 708 1 163 10 0 47 124 SDE2,EPHX1,TMEM63A,ACBD3
SE_02_109500760 chr1:225998297-226003635 Sample_02_1095 Blood CD34 Erythroid cells_Don002 760 1 124 7 0 47 124 SDE2
SE_02_153100517 chr1:225998341-226006174 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 517 2 178 12 0 47 124 SDE2,EPHX1,TMEM63A,ACBD3
SE_02_059300266 chr1:225998427-226004975 Sample_02_0593 Fetal spleenocytes fetal naive T cells 266 4 145 10 0 47 124 SDE2
SE_02_109400081 chr1:225998482-226003259 Sample_02_1094 Embryo H9_0Dox 81 1 113 7 0 45 124 SDE2
SE_02_059100503 chr1:225998667-226005015 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 503 3 139 10 0 45 124 SDE2
SE_02_054600283 chr1:225999546-226004105 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 283 3 94 8 0 35 0 SDE2
SE_02_054700174 chr1:225999667-226003954 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 174 2 88 8 0 31 0 SDE2
SE_02_048400378 chr1:225999700-226003294 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 378 1 72 6 0 30 0 SDE2
SE_02_048900198 chr1:225999724-226003178 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 198 1 69 6 0 30 0 SDE2
SE_02_048700241 chr1:225999735-226003896 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 241 2 86 8 0 30 0 SDE2
SE_02_048200179 chr1:225999848-226003296 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 179 1 66 6 0 30 0 SDE2
SE_02_048600220 chr1:226000045-226002900 Sample_02_0486 Bone marrow HSCe_66y_CD34+,CD38-,Lineage- 220 2 56 6 0 24 0 SDE2
SE_02_048800435 chr1:226001075-226003283 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 435 3 37 3 0 25 0 SDE2
SE_02_048500346 chr1:226001185-226003962 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 346 2 48 5 0 24 0 SDE2
SE_02_131800406 chr1:226001195-226035863 Sample_02_1318 Brain hMGLs_SORL1-A528T 406 8 801 80 0 58 0 H3F3A,SDE2,H3F3AP4
Genomic distribution of SEs associated with SDE2
Genome Browser

The strength of the tissue affected by the gene

Expression of SDE2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)