SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000136193
Gene: SCRN1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:29920104-29990289 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080000086 chr7:29915567-29932564 Sample_02_0800 Brain 3679 86 6 514 86 1 43 858 SCRN1,WIPF3
SE_02_021000768 chr7:29947552-29990525 Sample_02_0210 Lung MRC-5_N_1DPT 768 5 1021 71 2 100 452 SCRN1,PLEKHA8,FKBP14
SE_02_143300702 chr7:29948975-30004239 Sample_02_1433 Bone A673 STAG2 null 702 10 1329 89 4 105 452 SCRN1,PLEKHA8,FKBP14
SE_01_008800594 chr7:29953463-29990704 Sample_01_0088 Tibial nerve tibial-nerve 594 6 871 64 2 91 452 SCRN1,PLEKHA8,FKBP14
SE_02_108300710 chr7:29955958-29990367 Sample_02_1083 Macula macula 710 19 779 58 1 84 383 SCRN1,PLEKHA8,FKBP14
SE_02_118600248 chr7:29956010-29990419 Sample_02_1186 Brain GBM15 248 12 780 58 1 84 385 SCRN1,PLEKHA8,FKBP14
SE_02_118500292 chr7:29957591-29990373 Sample_02_1185 Brain GBM14 292 7 737 57 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_119400314 chr7:29957703-29990422 Sample_02_1194 Brain GBM28 314 14 736 57 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_119600361 chr7:29957729-29990363 Sample_02_1196 Brain GBM32 361 14 732 57 1 82 383 SCRN1,PLEKHA8,FKBP14
SE_02_097100324 chr7:29957831-29990430 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 324 13 731 57 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_118000141 chr7:29957952-29990406 Sample_02_1180 Brain GBM09 141 9 724 56 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_108000568 chr7:29957953-29990371 Sample_02_1080 Muscle JR1 shCtrl 568 5 724 56 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_120000300 chr7:29957959-29990556 Sample_02_1200 Brain GBM36 300 10 728 56 1 82 387 SCRN1,PLEKHA8,FKBP14
SE_02_117700653 chr7:29957995-29990378 Sample_02_1177 Brain GBM05 653 7 722 56 1 82 385 SCRN1,PLEKHA8,FKBP14
SE_02_117400515 chr7:29958049-29990348 Sample_02_1174 Brain GBM02 515 11 720 56 1 81 379 SCRN1,PLEKHA8,FKBP14
SE_02_095300224 chr7:29958058-29990382 Sample_02_0953 Brain H3.3K27M_1840 224 8 720 56 1 79 385 SCRN1,PLEKHA8,FKBP14
SE_02_108200862 chr7:29958162-29990383 Sample_02_1082 Retina retina 862 7 717 56 1 79 385 SCRN1,PLEKHA8,FKBP14
SE_02_059401224 chr7:29958522-29990649 Sample_02_0594 iPSC-derived neural progenitors 1224 7 719 56 1 75 387 SCRN1,PLEKHA8,FKBP14
SE_02_118300215 chr7:29958782-29990377 Sample_02_1183 Brain GBM12 215 14 704 55 1 74 385 SCRN1,PLEKHA8,FKBP14
SE_02_095800568 chr7:29962877-29990404 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 568 10 623 47 1 65 385 SCRN1,PLEKHA8,FKBP14
SE_02_097900946 chr7:29962931-29990335 Sample_02_0979 Brain JN14-BS1_H3.3K27M 946 8 620 47 1 65 379 SCRN1,PLEKHA8,FKBP14
SE_02_119300253 chr7:29962971-29990397 Sample_02_1193 Brain GBM27 253 9 621 47 1 65 385 SCRN1,PLEKHA8,FKBP14
SE_02_119800688 chr7:29963051-29990302 Sample_02_1198 Brain GBM34 688 10 615 46 1 64 375 SCRN1,PLEKHA8,FKBP14
SE_02_120200658 chr7:29963102-29990533 Sample_02_1202 Brain GBM38 658 9 618 46 1 65 387 SCRN1,PLEKHA8,FKBP14
SE_02_118200390 chr7:29963180-29989820 Sample_02_1182 Brain GBM11 390 9 602 46 1 64 255 SCRN1,PLEKHA8,FKBP14
SE_02_121100381 chr7:29963230-29990259 Sample_02_1211 Brain GBM21 381 11 611 46 1 64 366 SCRN1,PLEKHA8,FKBP14
SE_02_118700626 chr7:29963245-29990340 Sample_02_1187 Brain GBM16 626 10 611 46 1 65 379 SCRN1,PLEKHA8,FKBP14
SE_02_080000002 chr7:29963301-29990389 Sample_02_0800 Brain 3679 2 7 610 44 1 65 385 SCRN1,PLEKHA8,FKBP14
SE_02_085700520 chr7:29964325-29990355 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 520 6 586 43 1 63 382 SCRN1,PLEKHA8,FKBP14
SE_02_085400575 chr7:29964408-29990260 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 575 4 584 43 1 62 366 SCRN1,PLEKHA8,FKBP14
SE_02_119200603 chr7:29964510-29990358 Sample_02_1192 Brain GBM26 603 7 584 43 1 63 382 SCRN1,PLEKHA8,FKBP14
SE_02_119101022 chr7:29965119-29990308 Sample_02_1191 Brain GBM25 1022 9 565 43 1 62 376 SCRN1,PLEKHA8,FKBP14
SE_02_079400145 chr7:29968733-29990324 Sample_02_0794 Brain 1552 145 6 490 39 1 53 375 SCRN1,PLEKHA8,FKBP14
SE_02_117500794 chr7:29968771-29990290 Sample_02_1175 Brain GBM03 794 4 489 39 1 53 366 SCRN1,PLEKHA8,FKBP14
SE_02_122700574 chr7:29974752-29990446 Sample_02_1227 Bone marrow U266 574 4 376 27 1 46 236 SCRN1,PLEKHA8,FKBP14
SE_02_080100286 chr7:29975255-29990269 Sample_02_0801 Brain 2235 286 3 360 26 1 45 217 SCRN1,PLEKHA8,FKBP14
SE_02_083800168 chr7:29975509-29990155 Sample_02_0838 Embryo hNPCs_WT 168 2 348 26 1 45 199 SCRN1,PLEKHA8,FKBP14
SE_02_142000310 chr7:29975990-29990300 Sample_02_1420 Brain DIPG007 310 2 345 24 0 35 225 SCRN1,PLEKHA8,FKBP14
SE_02_146001202 chr7:29985012-29990429 Sample_02_1460 Blood Mutz-3 1202 3 115 3 0 22 235 SCRN1,PLEKHA8,FKBP14
SE_02_061501026 chr7:29985627-29990660 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1026 2 108 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_099100338 chr7:29985715-29991003 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 338 2 120 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_005500840 chr7:29986448-30001849 Sample_02_0055 Lung IMR-90_Nutlin-3a 840 2 363 17 2 25 237 SCRN1,PLEKHA8,FKBP14
SE_02_005400703 chr7:29986613-30001916 Sample_02_0054 Lung IMR-90_DMSO_1 703 2 356 18 2 25 237 SCRN1,PLEKHA8,FKBP14
SE_02_099000483 chr7:29986622-29991040 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 483 1 90 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_072701117 chr7:29986720-30001794 Sample_02_0727 Fetal lung IMR90_Etoposide 1117 2 349 16 2 25 237 SCRN1,PLEKHA8,FKBP14
SE_02_094801016 chr7:29986783-29990696 Sample_02_0948 Pharyng Detroit562 1016 1 73 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_113601041 chr7:29986809-29990844 Sample_02_1136 Bone U2OS-anaphase/telophase 1041 1 80 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_099200374 chr7:29986829-29990625 Sample_02_0992 Mammary gland MDA-MB-231_Par 374 1 70 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_094700266 chr7:29986843-29990428 Sample_02_0947 Tongue Cal27 266 1 66 2 0 22 235 SCRN1,PLEKHA8,FKBP14
SE_02_132200747 chr7:29986844-29990482 Sample_02_1322 Connective Tissue HT1080_WT 747 2 67 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_027400643 chr7:29986848-29990521 Sample_02_0274 Endometriosis hTERT_KD 643 1 67 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_040400517 chr7:29986893-29991732 Sample_02_0404 Mammary gland ZR-75-1_2 517 1 109 3 0 23 237 SCRN1,PLEKHA8,FKBP14
SE_02_158400706 chr7:29986950-29990476 Sample_02_1584 Brain U87 GBM_Mock 706 1 67 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_044800880 chr7:29986966-29990468 Sample_02_0448 Bone MNNG 880 1 66 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_136500695 chr7:29986984-29990380 Sample_02_1365 Pancreas AsPC1-untreated 695 1 63 2 0 22 235 SCRN1,PLEKHA8,FKBP14
SE_02_135400894 chr7:29986989-29990936 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 894 1 81 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_060900391 chr7:29986998-29990503 Sample_02_0609 Liposarcoma LPS141 391 1 65 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_094600388 chr7:29987004-29990693 Sample_02_0946 Tongue HN12 388 1 70 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_135100850 chr7:29987014-29991055 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 850 1 87 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_102500886 chr7:29987016-29990524 Sample_02_1025 Esophagus KYSE150 886 1 65 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_135200720 chr7:29987024-29991011 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 720 1 86 3 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_02_119900671 chr7:29987030-29990486 Sample_02_1199 Brain GBM35 671 1 64 2 0 22 237 SCRN1,PLEKHA8,FKBP14
SE_01_005000429 chr7:29987038-30006974 Sample_01_0050 Embryo neural-cell 429 3 461 24 2 42 237 SCRN1,PLEKHA8,FKBP14
SE_02_132100608 chr7:29987048-29990410 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 608 1 62 2 0 21 235 SCRN1,PLEKHA8,FKBP14
SE_02_132000679 chr7:29987053-29990369 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 679 1 61 2 0 21 233 SCRN1,PLEKHA8,FKBP14
SE_02_102100326 chr7:29987120-29990350 Sample_02_1021 Mammary gland SUM159R 326 1 61 2 0 21 231 SCRN1,PLEKHA8,FKBP14
SE_02_126800971 chr7:29987140-29990408 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 971 1 61 2 0 21 235 SCRN1,PLEKHA8,FKBP14
SE_02_126100061 chr7:29987158-29990414 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 61 1 62 2 0 21 235 SCRN1,PLEKHA8,FKBP14
SE_02_052100301 chr7:29987170-29990557 Sample_02_0521 Colon SW480 301 1 65 2 0 21 237 SCRN1,PLEKHA8,FKBP14
SE_02_102000392 chr7:29987174-29990344 Sample_02_1020 Mammary gland SUM159 392 1 61 2 0 21 229 SCRN1,PLEKHA8,FKBP14
SE_02_094100648 chr7:29987177-29990429 Sample_02_0941 Brain T98G 648 1 63 2 0 21 235 SCRN1,PLEKHA8,FKBP14
SE_02_055500923 chr7:29987194-30001886 Sample_02_0555 Other HAP1_WT 923 3 349 18 2 24 237 SCRN1,PLEKHA8,FKBP14
SE_02_064500814 chr7:29987283-29990280 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 814 1 59 2 0 19 221 SCRN1,PLEKHA8,FKBP14
SE_02_135300894 chr7:29987297-29990978 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 894 1 83 3 0 20 237 SCRN1,PLEKHA8,FKBP14
SE_02_064801063 chr7:29987302-29990374 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1063 1 60 2 0 20 235 SCRN1,PLEKHA8,FKBP14
SE_02_039601138 chr7:29987485-29990432 Sample_02_0396 Skin NHEK-D 1138 1 59 2 0 20 235 SCRN1,PLEKHA8,FKBP14
Genomic distribution of SEs associated with SCRN1
Genome Browser

The strength of the tissue affected by the gene

Expression of SCRN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)