SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000143365
Gene: RORC Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:151806071-151831845 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108000689 chr1:151795895-151836674 Sample_02_1080 Muscle JR1 shCtrl 689 10 1064 108 10 400 2212 LINGO4,RORC,THEM5,LOC100132111,TDRKH,OAZ3,MRPL9,C2CD4D
SE_02_023200327 chr1:151796687-151838237 Sample_02_0232 Tonsil ILC3 327 9 1079 113 10 421 2328 RORC,C2CD4D,LINGO4,LOC100132111,TDRKH,OAZ3,MRPL9,THEM5
SE_02_025100446 chr1:151801596-151833775 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 446 3 855 86 8 334 1925 RORC,LINGO4,LOC100132111,TDRKH,OAZ3,MRPL9,C2CD4D,THEM5
SE_02_110700429 chr1:151802371-151835307 Sample_02_1107 Brain SK-N-AS 429 8 876 90 8 321 1754 LINGO4,RORC,THEM5,LOC100132111,TDRKH,OAZ3,MRPL9,C2CD4D
SE_02_096700852 chr1:151809193-151834478 Sample_02_0967 Brain H3.3K27M_JN57 852 6 675 71 5 262 1171 RORC,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,MRPL9,C2CD4D
SE_01_010101050 chr1:151809358-151838254 Sample_01_0101 Pancreas pancreas_54y 1050 6 751 81 6 295 1297 RORC,C2CD4D,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,MRPL9
SE_02_045400065 chr1:151810872-151841631 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 65 1 783 85 5 326 1733 LOC100132111,RORC,C2CD4D,THEM5,LINGO4,TDRKH,OAZ3,MRPL9
SE_02_045600214 chr1:151813044-151836462 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 214 1 621 58 4 252 1064 RORC,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,MRPL9,C2CD4D
SE_02_104200436 chr1:151813551-151834540 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 436 6 566 53 4 244 967 RORC,THEM5,LINGO4,LOC100132111,TDRKH,MRPL9,OAZ3,C2CD4D
SE_02_003500142 chr1:151814299-151834327 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 142 2 540 49 3 241 919 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_02_003400131 chr1:151814301-151833825 Sample_02_0034 Peripheral blood CUTLL1_GSI 131 2 526 48 3 228 919 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_00_000800417 chr1:151814335-151841261 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 417 2 695 66 4 307 1477 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,OAZ3,THEM5
SE_02_034900221 chr1:151814479-151837642 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 221 2 614 58 4 262 908 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_00_004500486 chr1:151814564-151831348 Sample_00_0045 Thymus thymus 486 2 439 40 2 188 757 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_02_034800173 chr1:151814599-151837717 Sample_02_0348 Peripheral blood CUTLL1_wild-type 173 2 608 58 4 261 880 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_02_138600350 chr1:151814621-151819478 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 350 1 141 8 1 79 381 RORC,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,C2CD4D
SE_01_002500368 chr1:151815128-151837697 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 368 3 582 58 4 253 766 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,OAZ3,THEM5
SE_02_082601628 chr1:151815750-151834235 Sample_02_0826 Stomach gastric tumor 1628 4 489 49 3 225 669 RORC,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,C2CD4D
SE_02_138900085 chr1:151816623-151833764 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 85 1 459 48 3 172 626 RORC,THEM5,LINGO4,LOC100132111,TDRKH,OAZ3,C2CD4D
SE_02_138700498 chr1:151816738-151836098 Sample_02_1387 Peripheral blood Mac-1_ALK- 498 1 515 52 3 180 601 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_013200369 chr1:151817058-151841049 Sample_02_0132 Lung 1015_CL 369 2 618 66 4 243 1104 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,THEM5
SE_02_139100175 chr1:151817154-151836583 Sample_02_1391 Peripheral blood FE-PD_ALK- 175 1 509 51 3 182 538 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_013100393 chr1:151817173-151841140 Sample_02_0131 Lung 1015_PT 393 5 609 63 4 244 1096 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,THEM5
SE_02_004700459 chr1:151817279-151841716 Sample_02_0047 Pancreatic endoderm IIDP/donor790 459 2 619 65 4 239 1093 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,THEM5
SE_02_138800092 chr1:151817433-151835536 Sample_02_1388 Peripheral blood JB6_ALK+ 92 1 481 49 3 172 497 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_139200432 chr1:151818213-151832269 Sample_02_1392 Peripheral blood Mac-2A_ALK- 432 1 373 33 2 136 493 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_045500380 chr1:151818395-151833292 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 380 1 392 38 2 150 493 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_036700577 chr1:151818555-151834671 Sample_02_0367 Skeletal muscle NS129 577 3 431 42 2 163 493 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,THEM5
SE_02_003301038 chr1:151818787-151841802 Sample_02_0033 Pancreas pancreatic-islets-F 1038 3 576 60 3 228 1073 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,THEM5
SE_02_003200295 chr1:151819059-151841041 Sample_02_0032 Pancreas pancreatic-islets-M 295 5 552 58 3 225 1051 RORC,LOC100132111,C2CD4D,TDRKH,LINGO4,THEM5
SE_02_138600006 chr1:151819580-151830623 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 6 1 275 25 1 98 216 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_033900291 chr1:151819820-151834576 Sample_02_0339 Neuroblastoma NGP 291 2 388 41 2 154 493 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,THEM5
SE_02_022000241 chr1:151820291-151834409 Sample_02_0220 Brain BE2C_1 241 2 371 38 2 154 493 RORC,LOC100132111,TDRKH,C2CD4D,LINGO4,THEM5
SE_02_111200829 chr1:151820356-151835056 Sample_02_1112 T lymphocyte THP-6 T-ALL 829 2 385 40 2 154 493 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_139400470 chr1:151821742-151826030 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 470 1 113 7 0 32 69 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_139400275 chr1:151826474-151833068 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 275 1 184 22 2 73 362 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
SE_02_077800095 chr1:151828896-151838326 Sample_02_0778 Mammary gland MCF7_FASR 95 1 245 33 3 105 511 C2CD4D,RORC,THEM5,LINGO4,LOC100132111,TDRKH
SE_02_138600318 chr1:151830985-151835355 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 318 1 129 16 1 52 204 RORC,THEM5,LINGO4,LOC100132111,TDRKH,C2CD4D
Genomic distribution of SEs associated with RORC
Genome Browser

The strength of the tissue affected by the gene

Expression of RORC

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)