Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000117016 |
| Gene: | RIMS3 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr1:40620680-40665682 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_120500820 | chr1:40612663-40679340 |
Sample_02_1205 | Brain | NB3 | 820 | 26 | 1687 | 166 | 9 | 350 | 1916 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_104601562 | chr1:40624750-40679339 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 1562 | 13 | 1400 | 139 | 9 | 312 | 1219 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_034100372 | chr1:40625105-40666781 |
Sample_02_0341 | Autonomic ganglia | SH-SY5Y_untreat | 372 | 5 | 1079 | 112 | 9 | 278 | 1144 | RIMS3,NFYC,LOC100130557 |
| SE_02_110500580 | chr1:40625226-40669036 |
Sample_02_1105 | Brain | NBL-S | 580 | 17 | 1130 | 116 | 9 | 296 | 1123 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_158400733 | chr1:40625429-40666595 |
Sample_02_1584 | Brain | U87 GBM_Mock | 733 | 7 | 1069 | 112 | 9 | 277 | 1088 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_096000092 | chr1:40625569-40669002 |
Sample_02_0960 | Brain | H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells | 92 | 12 | 1121 | 114 | 9 | 294 | 1057 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_096200839 | chr1:40629086-40669048 |
Sample_02_0962 | Brain | H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells | 839 | 9 | 1014 | 103 | 9 | 279 | 727 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_096100317 | chr1:40629128-40663618 |
Sample_02_0961 | Brain | H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells | 317 | 6 | 886 | 94 | 8 | 200 | 497 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_030400473 | chr1:40636162-40666699 |
Sample_02_0304 | Neuroblastoma | N206 | 473 | 5 | 802 | 87 | 9 | 217 | 442 | RIMS3,NFYC,LOC100130557 |
| SE_02_145800242 | chr1:40643129-40652058 |
Sample_02_1458 | Pancreas | THP1+PANC1_shNC | 242 | 1 | 233 | 30 | 3 | 45 | 87 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_145900025 | chr1:40643167-40653885 |
Sample_02_1459 | Pancreas | THP1+PANC1_shCTCF | 25 | 1 | 290 | 33 | 4 | 49 | 87 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_027700450 | chr1:40647511-40666718 |
Sample_02_0277 | Retina | FW18 | 450 | 4 | 468 | 38 | 5 | 148 | 299 | RIMS3,NFYC,LOC100130557 |
| SE_02_027500645 | chr1:40647778-40666547 |
Sample_02_0275 | Retina | FW14 | 645 | 4 | 456 | 37 | 5 | 147 | 251 | RIMS3,NFYC,LOC100130557 |
| SE_02_027600299 | chr1:40647912-40666620 |
Sample_02_0276 | Retina | FW15 | 299 | 4 | 458 | 38 | 5 | 145 | 228 | RIMS3,NFYC,LOC100130557 |
| SE_02_030300343 | chr1:40648019-40666971 |
Sample_02_0303 | Neuroblastoma | LAN1 | 343 | 4 | 468 | 38 | 5 | 145 | 220 | RIMS3,NFYC,LOC100130557 |
| SE_02_123500523 | chr1:40648909-40666069 |
Sample_02_1235 | Brain | Neuroblastoma PDX tumour cells | 523 | 11 | 428 | 35 | 5 | 142 | 219 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_068600595 | chr1:40649295-40668944 |
Sample_02_0686 | Lung | NCI-H128_no infection | 595 | 5 | 484 | 41 | 5 | 144 | 219 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_121800332 | chr1:40649620-40669650 |
Sample_02_1218 | Bone marrow | Daudi | 332 | 13 | 505 | 42 | 5 | 165 | 219 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_123701065 | chr1:40651475-40665538 |
Sample_02_1237 | Skin | MKL2_virus_positive | 1065 | 3 | 350 | 29 | 2 | 101 | 112 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_106300530 | chr1:40653488-40665295 |
Sample_02_1063 | Brain | CLB-GA-control | 530 | 5 | 286 | 24 | 1 | 73 | 29 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_106400511 | chr1:40653575-40668984 |
Sample_02_1064 | Brain | CLB-GA-Dinaciclib_8h | 511 | 5 | 375 | 30 | 1 | 133 | 219 | RIMS3,NFYC,NFYC-AS1 |
| SE_02_031500513 | chr1:40654161-40666996 |
Sample_02_0315 | Neuroblastoma | TR14 | 513 | 3 | 319 | 27 | 1 | 120 | 219 | RIMS3,NFYC,LOC100130557 |
| SE_02_108000915 | chr1:40661808-40665716 |
Sample_02_1080 | Muscle | JR1 shCtrl | 915 | 1 | 77 | 9 | 1 | 82 | 169 | RIMS3,NFYC,NFYC-AS1 |
Genomic distribution of SEs associated with RIMS3