SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000090565
Gene: RAB11FIP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:425649-523011 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_027401119 chr16:423393-427225 Sample_02_0274 Endometriosis hTERT_KD 1119 1 92 7 0 39 390 RAB11FIP3,LOC100134368,DECR2,NME4,TMEM8A
SE_02_039601617 chr16:423525-427615 Sample_02_0396 Skin NHEK-D 1617 1 105 8 0 39 390 RAB11FIP3,LOC100134368,DECR2,NME4,TMEM8A
SE_02_103601671 chr16:429572-492670 Sample_02_1036 Mammary gland HCC70_XY018 1671 17 2064 206 0 46 566 RAB11FIP3,LOC100134368,DECR2,NME4,MIR5587,CAPN15,TMEM8A,LINC00235
SE_02_098901789 chr16:449899-484559 Sample_02_0989 Kidney kidney cortex_WT 1789 10 1024 100 0 32 377 RAB11FIP3,DECR2,LINC00235,CAPN15
SE_02_027200171 chr16:456284-477318 Sample_02_0272 Kidney 20431713T 171 4 671 52 0 18 263 RAB11FIP3
SE_01_000200122 chr16:456449-459059 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 122 1 92 7 0 3 0 RAB11FIP3
SE_02_027500632 chr16:465872-493019 Sample_02_0275 Retina FW14 632 4 884 110 0 32 487 RAB11FIP3,SOLH,NCRNA00235
SE_02_077502161 chr16:466105-468515 Sample_02_0775 Pancreas EndoC-BH1_SE 2161 1 63 4 0 0 0 RAB11FIP3
SE_02_027600412 chr16:466152-492857 Sample_02_0276 Retina FW15 412 5 862 110 0 32 487 RAB11FIP3,SOLH,NCRNA00235
SE_02_032800533 chr16:470729-485722 Sample_02_0328 Embryo H9_naive 533 2 427 55 0 22 298 RAB11FIP3,SOLH,NCRNA00235
SE_02_041800420 chr16:471277-484399 Sample_02_0418 Embryo H9_Null+EZH2 420 2 364 46 0 21 250 RAB11FIP3,SOLH,NCRNA00235
SE_02_041700157 chr16:471561-483706 Sample_02_0417 Embryo H9_Null 157 2 333 43 0 16 194 RAB11FIP3,SOLH,NCRNA00235
SE_00_002401211 chr16:482203-492825 Sample_00_0024 Embryo mesendoderm 1211 2 420 64 0 15 303 RAB11FIP3,SOLH,NCRNA00235
Genomic distribution of SEs associated with RAB11FIP3
Genome Browser

The strength of the tissue affected by the gene

Expression of RAB11FIP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)