SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000213413
Gene: PVRIG Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100218241-100221490 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009600019 chr7:100178689-100231523 Sample_01_0096 B-cell lymphoma DOHH2 19 11 1350 180 3 96 3031 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_01_005500193 chr7:100179843-100228484 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 193 7 1251 163 3 96 3031 STAG3,GATS,PVRIG,C7ORF59,GPC2,GAL3ST4,C7ORF43
SE_02_078400224 chr7:100180222-100222807 Sample_02_0784 Blood OSU-CLL 224 10 1107 143 3 96 2845 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_078200068 chr7:100180794-100224456 Sample_02_0782 Blood MEC1 68 14 1128 145 3 95 2938 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_130400358 chr7:100180896-100243795 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 358 20 1600 202 4 95 3021 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_077900138 chr7:100188836-100233871 Sample_02_0779 Lymphoma U2932 138 23 1138 151 3 79 2804 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_130300415 chr7:100189288-100231733 Sample_02_1303 Lymphoma RL_tazemetostat 415 16 1082 144 3 74 2656 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_01_002000554 chr7:100189445-100222846 Sample_01_0020 Blood B-cell 554 5 871 113 3 74 2461 STAG3,GATS,PVRIG,C7ORF59,GPC2,GAL3ST4,C7ORF43
SE_02_121800212 chr7:100189511-100231507 Sample_02_1218 Bone marrow Daudi 212 23 1074 143 3 72 2632 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_130200504 chr7:100189520-100231742 Sample_02_1302 Lymphoma RL DMSO 504 14 1079 143 3 72 2629 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_01_008400254 chr7:100189532-100224300 Sample_01_0084 Spleen spleen 254 6 909 120 3 72 2626 STAG3,GATS,PVRIG,C7ORF59,GPC2,GAL3ST4,C7ORF43
SE_02_028800187 chr7:100189791-100222788 Sample_02_0288 Tonsil CB5_H3K27Ac 187 4 860 112 3 72 2393 STAG3,GATS,PVRIG,C7ORF59,GPC2,GAL3ST4,C7ORF43
SE_02_078300115 chr7:100189809-100223091 Sample_02_0783 Blood MEC2 115 12 866 112 3 72 2418 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_038700114 chr7:100191844-100222273 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 114 16 807 110 3 70 2316 STAG3,GATS,PVRIG,C7ORF59,GPC2,GAL3ST4,C7ORF43
SE_02_073600060 chr7:100192129-100222655 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 60 8 812 111 3 70 2372 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_00_005601002 chr7:100192185-100223061 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1002 11 821 111 3 70 2418 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4,SPDYE3,MBLAC1
SE_02_104800299 chr7:100199308-100234174 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 299 14 926 131 3 57 2300 STAG3,PVRIG,GATS,C7ORF43,GPC2,GAL3ST4,MIR4658
SE_02_023401091 chr7:100208060-100224420 Sample_02_0234 Tonsil Th17 1091 5 495 82 3 13 1410 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_02_013200517 chr7:100208098-100223202 Sample_02_0132 Lung 1015_CL 517 2 457 74 3 13 1242 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_02_013100495 chr7:100208133-100222860 Sample_02_0131 Lung 1015_PT 495 2 451 74 3 13 1231 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_00_000700254 chr7:100208203-100223154 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 254 2 454 74 3 13 1242 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_01_004300331 chr7:100208374-100223293 Sample_01_0043 Blood KOPT-K1 331 1 456 75 3 13 1242 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_00_004400252 chr7:100208483-100223057 Sample_00_0044 Cord blood T-cell 252 3 451 74 3 13 1242 STAG3,GATS,PVRIG,C7ORF43,GAL3ST4,GPC2
SE_02_104200350 chr7:100209298-100224987 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 350 11 490 84 3 13 1410 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_034800092 chr7:100209790-100248951 Sample_02_0348 Peripheral blood CUTLL1_wild-type 92 5 1090 155 3 13 1503 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_00_004500085 chr7:100210042-100222862 Sample_00_0045 Thymus thymus 85 2 414 68 2 13 1231 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_01_006700231 chr7:100210072-100228567 Sample_01_0067 Peritoneal effusion: derived from metastatic site: peritoneal cavity SUDHL6 231 3 549 88 2 13 1410 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_024700184 chr7:100210091-100228344 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 184 2 545 88 2 13 1410 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_003100306 chr7:100210163-100222965 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 306 2 413 68 2 13 1242 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_022500308 chr7:100210304-100222979 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 308 2 412 68 2 13 1242 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_006000399 chr7:100210338-100222859 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 399 3 409 68 2 13 1231 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_022600238 chr7:100210466-100223460 Sample_02_0226 Blood KOPTK1 238 1 418 69 2 11 1255 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_005900343 chr7:100210492-100222852 Sample_02_0059 Haematopoietic and lymphoid tissue blood WT/Jurkat 343 3 406 67 2 11 1231 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_142900953 chr7:100210523-100245575 Sample_02_1429 Blood GM12878_WT 953 9 976 140 3 11 1503 STAG3,PVRIG,GATS,GPC2,GAL3ST4,PILRA,TAF6,PILRB,C7orf43,ZNF3,CNPY4,LAMTOR4,MBLAC1,AP4M1
SE_02_002500429 chr7:100210602-100222234 Sample_02_0025 Blood CD19donorA 429 5 387 65 2 11 1140 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_002200331 chr7:100210604-100222581 Sample_02_0022 Blood CD8donorA 331 6 395 66 2 11 1177 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_034900086 chr7:100210617-100248942 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 86 7 1074 150 3 11 1503 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_022100239 chr7:100210704-100223301 Sample_02_0221 Blood CCRF-CEM 239 2 412 67 2 11 1242 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_005800326 chr7:100210706-100222990 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 326 2 405 66 2 11 1242 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_003500074 chr7:100210739-100224373 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 74 4 442 73 2 11 1410 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_003400054 chr7:100210745-100247715 Sample_02_0034 Peripheral blood CUTLL1_GSI 54 13 1046 146 3 11 1503 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_00_003900620 chr7:100210827-100222605 Sample_00_0039 Spleen spleen_3y 620 2 394 66 2 10 1182 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_012800219 chr7:100210828-100228778 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 219 10 538 86 2 10 1407 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_00_002700134 chr7:100210838-100222880 Sample_00_0027 Blood natural-killer-cell 134 3 402 66 2 10 1228 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_059300350 chr7:100210861-100222844 Sample_02_0593 Fetal spleenocytes fetal naive T cells 350 3 400 66 2 10 1222 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_059100256 chr7:100210904-100224226 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 256 6 436 72 2 10 1396 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_104400141 chr7:100210939-100231548 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 141 4 602 96 2 10 1392 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_00_000900345 chr7:100210954-100223073 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 345 3 402 66 2 10 1223 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_103900154 chr7:100211004-100227018 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 154 5 494 83 2 10 1382 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_063900139 chr7:100211022-100222722 Sample_02_0639 Blood T-ALL PDX 139 5 391 66 2 10 1177 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_002400385 chr7:100211160-100222483 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 385 3 379 66 2 10 1099 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_038600051 chr7:100211180-100222018 Sample_02_0386 Lymph node CD19+_B_cells_FL1-2 51 4 369 64 2 10 1073 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_111200322 chr7:100211185-100248437 Sample_02_1112 T lymphocyte THP-6 T-ALL 322 12 1051 147 3 10 1436 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_082601509 chr7:100211192-100247118 Sample_02_0826 Stomach gastric tumor 1509 8 1016 144 3 10 1433 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_082700972 chr7:100211197-100222995 Sample_02_0827 Stomach normal gastric 972 3 394 66 2 10 1172 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_00_004700312 chr7:100211207-100223104 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 312 2 395 66 2 10 1171 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_115400346 chr7:100211228-100254853 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 346 10 1203 166 3 10 1429 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_139300516 chr7:100211246-100222542 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 516 3 381 66 2 10 1091 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_130000281 chr7:100211346-100272768 Sample_02_1300 Blood KARPAS-45 281 24 1630 194 3 9 1629 STAG3,PVRIG,GATS,GPC2,GAL3ST4,SPDYE3
SE_02_104500221 chr7:100211417-100224179 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 221 5 425 71 2 9 1304 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_01_005300464 chr7:100213151-100229670 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 464 3 501 81 2 2 1156 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_00_000500180 chr7:100213288-100222703 Sample_00_0005 Blood B-cell 180 1 334 56 2 2 919 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_01_007600356 chr7:100213800-100273532 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 356 6 1570 181 3 2 1389 STAG3,GATS,PVRIG,GAL3ST4,SPDYE3,GPC2
SE_02_036800097 chr7:100213884-100271638 Sample_02_0368 Skeletal muscle NS134 97 12 1534 177 3 2 1161 STAG3,GATS,PVRIG,GAL3ST4,SPDYE3,GPC2
SE_02_050500527 chr7:100213916-100250095 Sample_02_0505 Esophagus KYSE70_1 527 10 1012 139 3 2 1150 STAG3,PVRIG,GATS,GPC2,GAL3ST4
SE_02_051600280 chr7:100213918-100273023 Sample_02_0516 Esophagus KYSE70 280 12 1560 179 3 2 1361 STAG3,PVRIG,GATS,GPC2,GAL3ST4,SPDYE3
SE_02_051700159 chr7:100214050-100273059 Sample_02_0517 Esophagus TE5 159 19 1558 179 3 2 1334 STAG3,PVRIG,GATS,GPC2,GAL3ST4,SPDYE3
SE_00_000800342 chr7:100214067-100223317 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 342 1 324 52 2 2 858 STAG3,GATS,PVRIG,GPC2,GAL3ST4
SE_02_036700210 chr7:100214091-100271338 Sample_02_0367 Skeletal muscle NS129 210 9 1527 177 3 2 1118 STAG3,GATS,PVRIG,GAL3ST4,SPDYE3,GPC2
SE_02_050600152 chr7:100214124-100273245 Sample_02_0506 Esophagus TE5_1 152 22 1558 179 3 2 1318 STAG3,PVRIG,GATS,GPC2,GAL3ST4,SPDYE3
SE_02_104000226 chr7:100214466-100228493 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 226 9 430 67 2 0 960 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_01_009700167 chr7:100214724-100273300 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 167 17 1531 174 3 0 1249 PVRIG,GATS,GPC2,GAL3ST4,SPDYE3,STAG3
SE_02_117300630 chr7:100215694-100272849 Sample_02_1173 Brain GBM01 630 20 1496 168 3 0 1249 PVRIG,GATS,GPC2,GAL3ST4,SPDYE3,STAG3
SE_02_104100174 chr7:100215893-100223767 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 174 6 267 43 2 0 848 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_002300396 chr7:100215916-100222463 Sample_02_0023 Blood CD8donorC 396 7 233 40 2 0 685 GATS,PVRIG,STAG3,GPC2,GAL3ST4
SE_02_115300371 chr7:100216614-100253664 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 371 7 1016 135 3 0 1037 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_014800415 chr7:100216780-100224161 Sample_02_0148 Blood CD8_T_cells 415 3 258 40 2 0 929 GATS,PVRIG,STAG3,GPC2,GAL3ST4
SE_02_075000895 chr7:100216872-100224189 Sample_02_0750 Lymphoma Rec-1_GSI 895 5 253 40 2 0 934 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_120100209 chr7:100217030-100249596 Sample_02_1201 Brain GBM37 209 12 892 120 3 0 1037 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_107100157 chr7:100217143-100223125 Sample_02_1071 Blood Jurkat_WT 157 2 212 33 2 0 776 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_107000148 chr7:100217180-100224170 Sample_02_1070 Blood SupT1_WT 148 5 245 39 2 0 931 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_038400042 chr7:100217181-100222201 Sample_02_0384 Blood Ik6pre-BALL+TET-Ik1 42 3 188 31 2 0 674 GATS,PVRIG,STAG3,GPC2,GAL3ST4
SE_02_059200193 chr7:100217207-100223050 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 193 3 208 31 2 0 776 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_115200443 chr7:100217285-100244019 Sample_02_1152 Lymphoma RL_WT_gRNA1 443 5 728 97 3 0 1037 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_121500386 chr7:100217320-100222978 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 386 2 203 30 2 0 776 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_115500381 chr7:100217371-100248141 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 381 4 849 110 3 0 1037 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_121600376 chr7:100218724-100223067 Sample_02_1216 Blood Jurkat ZBTB1 KO 376 1 155 15 1 0 741 PVRIG,GATS,GPC2,GAL3ST4,STAG3
SE_02_157400206 chr7:100218886-100222835 Sample_02_1574 Blood JURKAT 206 1 145 13 1 0 717 PVRIG,GATS,STAG3,GPC2
SE_02_104301168 chr7:100219157-100223200 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1168 1 146 12 1 0 719 PVRIG,GATS,STAG3,GPC2
SE_02_104900465 chr7:100219160-100227867 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 465 1 258 30 1 0 886 PVRIG,GATS,STAG3,GPC2
SE_02_104700322 chr7:100219182-100224222 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 322 1 178 18 1 0 880 PVRIG,GATS,STAG3,GPC2
SE_02_055200343 chr7:100220998-100269911 Sample_02_0552 Other SYO1 shCt 343 17 1235 131 1 0 526 PVRIG,GATS,GPC2,SPDYE3,STAG3
SE_02_103601730 chr7:100224209-100265829 Sample_02_1036 Mammary gland HCC70_XY018 1730 26 1051 113 1 0 96 GATS,GPC2,SPDYE3,STAG3,PVRIG
SE_02_077502198 chr7:100224213-100253417 Sample_02_0775 Pancreas EndoC-BH1_SE 2198 12 741 93 1 0 96 GATS,STAG3,GPC2,PVRIG
SE_02_102600334 chr7:100240048-100249944 Sample_02_1026 Esophagus KYSE200 334 1 268 32 1 0 0 GATS,PVRIG
Genomic distribution of SEs associated with PVRIG
Genome Browser

The strength of the tissue affected by the gene

Expression of PVRIG

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)