SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000167371
Gene: PRRT2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:29811382-29815892 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055300108 chr16:29801138-29818011 Sample_02_0553 Other HSSY2 shCt 108 1 509 22 1 314 3415 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_027500185 chr16:29802148-29817655 Sample_02_0275 Retina FW14 185 1 482 22 1 314 3389 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_027700107 chr16:29802257-29817811 Sample_02_0277 Retina FW18 107 1 482 22 1 314 3389 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_028400471 chr16:29802961-29817787 Sample_02_0284 Pelvis patient 119 471 1 466 21 1 312 3316 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_034800185 chr16:29803149-29818458 Sample_02_0348 Peripheral blood CUTLL1_wild-type 185 1 469 22 1 311 3373 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_026300896 chr16:29803361-29817445 Sample_02_0263 Osteoblastic hFOB_undifferentiated 896 1 439 18 1 311 3265 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_123500179 chr16:29803382-29815993 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 179 4 401 16 1 288 2907 KIF22,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,PAGR1,ZG16
SE_02_101700787 chr16:29803626-29818349 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 787 1 456 21 1 310 3280 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_01_007700355 chr16:29803643-29817830 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 355 1 445 20 1 310 3214 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_025300090 chr16:29803666-29817567 Sample_02_0253 Brain BE2C_DMSO 90 1 440 18 1 310 3207 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_01_009200292 chr16:29803669-29817502 Sample_01_0092 Vagina vagina 292 1 434 18 1 310 3207 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_01_007300421 chr16:29803917-29817697 Sample_01_0073 Coronary artery coronary-artery 421 1 437 20 1 310 3162 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_042100120 chr16:29803918-29817666 Sample_02_0421 Brain BE2C_3 120 1 435 20 1 310 3162 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_025400069 chr16:29803935-29817606 Sample_02_0254 Neuroblastoma IMR5-75 69 1 434 20 1 310 3158 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_034100341 chr16:29804129-29817651 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 341 1 432 20 1 310 3116 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_108200358 chr16:29804218-29817352 Sample_02_1082 Retina retina 358 1 416 17 1 310 3083 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_027800184 chr16:29804250-29817599 Sample_02_0278 Retina FW24 184 1 427 20 1 310 3096 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_120200219 chr16:29804319-29817531 Sample_02_1202 Brain GBM38 219 1 420 18 1 310 3096 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_053900131 chr16:29804466-29814927 Sample_02_0539 Brain SK-N-BE_2_-C_GFP_control 131 1 348 9 1 278 2527 KIF22,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,PAGR1,ZG16
SE_02_097100172 chr16:29804513-29817697 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 172 1 421 20 1 310 3096 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_097600221 chr16:29804540-29817338 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 221 1 407 17 1 310 3078 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_101500565 chr16:29804559-29817770 Sample_02_1015 Embryo H9_ Undifferentiated 565 1 421 20 1 310 3096 KIF22,PAGR1,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,ZG16
SE_02_015800203 chr16:29804573-29817549 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 203 1 416 18 1 310 3096 PRRT2,KIF22,MAZ,C16ORF53,MVP,ZG16,LOC440356,CDIPT
SE_02_093100300 chr16:29804669-29814542 Sample_02_0931 Embryo H9 UTXKO 300 5 335 8 1 265 2413 KIF22,PRRT2,MAZ,CDIPT,MVP,CDIPT-AS1,PAGR1,ZG16
SE_02_003600908 chr16:29806237-29812804 Sample_02_0036 Embryo H7 908 1 246 7 1 182 1656 PRRT2,MAZ,MVP,C16ORF53,ZG16,KIF22
SE_02_029900233 chr16:29806365-29817851 Sample_02_0299 Neuroblastoma CLB-MA 233 1 374 19 1 277 2729 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_043600116 chr16:29806368-29813925 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 116 1 275 7 1 217 1892 PRRT2,MAZ,MVP,C16ORF53,ZG16,KIF22,LOC440356,CDIPT
SE_02_029700579 chr16:29806378-29817859 Sample_02_0297 Neuroblastoma CLB-CAR 579 1 374 19 1 277 2724 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_030400246 chr16:29806444-29817689 Sample_02_0304 Neuroblastoma N206 246 1 374 19 1 277 2682 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_029600308 chr16:29806523-29818137 Sample_02_0296 Neuroblastoma CLB-BER-Lud 308 1 380 19 1 277 2692 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_01_008300621 chr16:29806530-29817778 Sample_01_0083 Sigmoid colon sigmoid-colon 621 1 374 19 1 277 2650 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_038000559 chr16:29806541-29817987 Sample_02_0380 Skeletal muscle RH18 559 1 376 19 1 277 2669 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_031800209 chr16:29806545-29817933 Sample_02_0318 Neuroblastoma NB69 209 1 375 19 1 277 2659 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_01_007800741 chr16:29806547-29817831 Sample_01_0078 Heart left ventricle heart-left-ventricle 741 1 374 19 1 277 2643 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_01_007400591 chr16:29806555-29817847 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 591 1 374 19 1 277 2639 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_01_008900478 chr16:29806555-29818145 Sample_01_0089 Transverse colon transverse-colon 478 1 380 19 1 277 2672 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_01_009100591 chr16:29806567-29817628 Sample_01_0091 Uterus uterus 591 1 371 19 1 277 2631 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_108300794 chr16:29806572-29817787 Sample_02_1083 Macula macula 794 1 374 19 1 277 2631 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_056300275 chr16:29806590-29813697 Sample_02_0563 Mammary gland MCF7L-P_0h 275 1 267 7 1 204 1732 PRRT2,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,PAGR1,ZG16
SE_02_085400555 chr16:29806591-29813580 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 555 1 261 7 1 197 1703 PRRT2,MAZ,CDIPT,MVP,KIF22,PAGR1,ZG16
SE_02_148100374 chr16:29806597-29818214 Sample_02_1481 Bone MIC 374 1 382 19 1 277 2679 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_148000403 chr16:29806600-29817819 Sample_02_1480 Bone MHH-ES-1 403 1 374 19 1 277 2622 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_147600132 chr16:29806601-29817701 Sample_02_1476 Bone EW-1 132 1 374 19 1 277 2619 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_128000456 chr16:29806602-29817927 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 456 1 375 19 1 277 2637 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_147400369 chr16:29806603-29817605 Sample_02_1474 Bone CHLA-10 369 2 371 19 1 277 2617 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_031300092 chr16:29806607-29817684 Sample_02_0313 Neuroblastoma SK-N-DZ 92 1 374 19 1 277 2615 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_044600738 chr16:29806613-29817604 Sample_02_0446 Bone osteosarcoma tumor P2 738 1 371 19 1 277 2614 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_147900343 chr16:29806618-29817576 Sample_02_1479 Bone EW-7 343 1 371 17 1 277 2611 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_147800442 chr16:29806625-29818870 Sample_02_1478 Bone EW-3 442 1 398 20 1 277 2718 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_01_009300986 chr16:29806626-29817413 Sample_01_0093 Aorta ascending aorta 986 1 364 17 1 277 2606 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_150000522 chr16:29806629-29816022 Sample_02_1500 Brain KELLY_untreat 522 3 329 15 1 254 2253 PRRT2,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,PAGR1,ZG16
SE_02_111200565 chr16:29806630-29818755 Sample_02_1112 T lymphocyte THP-6 T-ALL 565 1 396 20 1 277 2714 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_103000261 chr16:29806630-29818799 Sample_02_1030 Colon DKO 261 1 397 20 1 277 2714 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_155300702 chr16:29806637-29817542 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 702 1 366 17 1 277 2605 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_104900677 chr16:29806682-29815689 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 677 1 318 13 1 252 2182 PRRT2,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,PAGR1,ZG16
SE_02_124600447 chr16:29807108-29817445 Sample_02_1246 Brain LAN5_ATRA 447 1 354 17 1 235 2438 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_030300189 chr16:29807120-29818300 Sample_02_0303 Neuroblastoma LAN1 189 1 374 20 1 235 2506 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_085200090 chr16:29807153-29818307 Sample_02_0852 Mammary gland MCF7L-P 90 1 374 20 1 234 2495 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_115900089 chr16:29807153-29818307 Sample_02_1159 Mammary gland MCF7 89 1 374 20 1 234 2495 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_031000300 chr16:29807163-29817859 Sample_02_0310 Neuroblastoma SJNB8 300 1 363 19 1 234 2435 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_085300214 chr16:29807172-29818563 Sample_02_0853 Mammary gland MCF7L-TamR 214 1 380 20 1 234 2515 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_031500274 chr16:29807175-29817582 Sample_02_0315 Neuroblastoma TR14 274 1 360 19 1 234 2425 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_147500377 chr16:29807175-29820024 Sample_02_1475 Bone CHLA-25 377 1 429 23 1 237 2650 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_110800181 chr16:29807193-29817721 Sample_02_1108 Brain SK-N-BE_2_-C 181 1 363 19 1 232 2417 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_110000229 chr16:29807200-29817884 Sample_02_1100 Brain COG-N-415 229 1 363 19 1 231 2424 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_110700649 chr16:29807201-29815673 Sample_02_1107 Brain SK-N-AS 649 1 309 13 1 206 2005 PRRT2,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,PAGR1,ZG16
SE_02_110400335 chr16:29807215-29817827 Sample_02_1104 Brain NB-69 335 1 362 19 1 231 2411 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_110500344 chr16:29807217-29817414 Sample_02_1105 Brain NBL-S 344 1 352 17 1 231 2403 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_066300342 chr16:29807219-29818031 Sample_02_0663 Thyroid TT 342 1 367 19 1 231 2434 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_148500729 chr16:29807225-29817878 Sample_02_1485 Bone SK-ES-1 729 1 362 19 1 229 2419 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_121200325 chr16:29807230-29817412 Sample_02_1212 Brain GBM30 325 1 352 17 1 229 2400 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_030900096 chr16:29807230-29817784 Sample_02_0309 Neuroblastoma SJNB6 96 1 362 19 1 229 2405 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_110900355 chr16:29807230-29817908 Sample_02_1109 Brain SK-N-FI 355 1 362 19 1 229 2424 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_02_006800430 chr16:29807257-29813452 Sample_02_0068 Skin A375_DMSO 430 1 242 7 1 143 1429 PRRT2,MAZ,MVP,C16ORF53,ZG16,KIF22,CDIPT
SE_02_133300091 chr16:29808525-29817642 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 91 1 289 17 1 182 2108 PRRT2,PAGR1,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,ZG16
SE_00_002401219 chr16:29808756-29817539 Sample_00_0024 Embryo mesendoderm 1219 2 275 15 1 167 2064 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_007500243 chr16:29809402-29817585 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 243 1 250 16 0 162 1935 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_001800525 chr16:29809601-29817526 Sample_02_0018 Embryo NEC 525 1 240 14 0 155 1873 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_00_004800355 chr16:29809877-29814135 Sample_00_0048 Embryo neuronal stem cell originated from H1 355 2 149 4 0 73 1000 PRRT2,MAZ,CDIPT,MVP,KIF22,CDIPT-AS1,PAGR1,ZG16
SE_02_004400430 chr16:29810209-29817363 Sample_02_0044 Embryo endodermal CyT49_ES_D5 430 3 207 13 0 125 1694 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
SE_02_004500918 chr16:29810253-29817328 Sample_02_0045 Embryo endodermal CyT49_ES_D7 918 3 204 13 0 124 1673 PRRT2,MAZ,C16ORF53,MVP,ZG16,KIF22,LOC440356,CDIPT
Genomic distribution of SEs associated with PRRT2
Genome Browser

The strength of the tissue affected by the gene

Expression of PRRT2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)