Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000164256 |
| Gene: | PRDM9 | Gene type: | protein_coding |
| Strand: | + | External links: |
|
| Genomic region: | chr5:23443586-23528093 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_060400180 | chr5:22890098-22909686 |
Sample_02_0604 | Mammary gland | MCF10A_scrshRNA_DMSO | 180 | 5 | 572 | 0 | 1 | 15 | 0 | CDH12,PRDM9 |
| SE_02_060400309 | chr5:23006711-23030328 |
Sample_02_0604 | Mammary gland | MCF10A_scrshRNA_DMSO | 309 | 5 | 748 | 22 | 0 | 34 | 0 | CDH12,PRDM9 |
| SE_02_012400905 | chr5:23230548-23238060 |
Sample_02_0124 | Embryo | Embryonic-stem-cells_Naive | 905 | 1 | 217 | 2 | 0 | 0 | 0 | PRDM9 |
| SE_02_055701177 | chr5:23445783-23453117 |
Sample_02_0557 | iPSCs | WT hiPSC#1 | 1177 | 2 | 209 | 0 | 0 | 0 | 0 | PRDM9 |
| SE_02_151100463 | chr5:23626530-23633070 |
Sample_02_1511 | Lung | H3122_untreated | 463 | 2 | 236 | 1 | 1 | 0 | 0 | PRDM9 |
| SE_02_127500589 | chr5:24043480-24073774 |
Sample_02_1275 | Prostate | PC3_Vorinostat | 589 | 26 | 838 | 31 | 0 | 31 | 0 | C5ORF17,PRDM9 |
| SE_02_102400130 | chr5:24044241-24073826 |
Sample_02_1024 | Prostate | PC3 cells | 130 | 6 | 828 | 30 | 0 | 31 | 0 | C5ORF17,PRDM9 |
| SE_02_139000519 | chr5:24057286-24070751 |
Sample_02_1390 | Peripheral blood | SU-DHL-1_ALK+ | 519 | 2 | 396 | 14 | 0 | 14 | 0 | C5ORF17,PRDM9 |
Genomic distribution of SEs associated with PRDM9