SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000241350
Gene: PMS2P11 Gene type: transcribed_unprocessed_pseudogene
Strand: + External links:
Genomic region: chr7:77011551-77015853 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_020400202 chr7:76827328-76831770 Sample_02_0204 Stomach IM95 202 2 109 15 0 7 0 PMS2P11
SE_02_022800475 chr7:76859359-76872680 Sample_02_0228 Oesophagus KYSE510 475 1 233 48 2 130 0 PMS2P11
SE_02_024300405 chr7:76862279-76915354 Sample_02_0243 Foreskin foreskin_HFFs 405 4 1138 212 3 268 0 PMS2P11
SE_02_024400243 chr7:76866037-76912655 Sample_02_0244 Foreskin foreskin_D11 243 4 1007 191 1 234 0 PMS2P11
SE_00_001000597 chr7:76868776-76872299 Sample_00_0010 Embryo endodermal-cell 597 1 52 9 1 60 0 PMS2P11
SE_02_003900323 chr7:76900876-76917850 Sample_02_0039 Embryo AFG 323 2 373 61 1 62 0 PMS2P11
SE_01_005400493 chr7:76913426-76946689 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 493 3 727 77 1 86 0 PMS2P11
SE_02_021600021 chr7:76949794-77006847 Sample_02_0216 Skin NHEK_scramble 21 24 1155 91 1 0 779 PMS2P11,LOC100132832
SE_02_035400253 chr7:76951634-76986183 Sample_02_0354 Colon Colo205 253 7 626 57 1 0 188 PMS2P11
SE_02_024200683 chr7:76954117-76968430 Sample_02_0242 Colon V481 683 3 177 21 0 0 0 PMS2P11
SE_02_011600536 chr7:76954127-76969224 Sample_02_0116 Mammary gland MDA-MB-231_untreat 536 4 187 21 0 0 0 PMS2P11
SE_02_008600517 chr7:76954129-76981111 Sample_02_0086 Pancreas CAPAN1 517 2 519 48 1 0 103 PMS2P11
SE_02_020800183 chr7:76954182-76968066 Sample_02_0208 Stomach YCC3 183 8 174 20 0 0 0 PMS2P11
SE_02_020400191 chr7:76954188-76960750 Sample_02_0204 Stomach IM95 191 6 46 3 0 0 0 PMS2P11
SE_02_026800281 chr7:76954209-76977981 Sample_02_0268 Kidney A-498 281 6 394 39 0 0 0 PMS2P11
SE_02_001100112 chr7:76954212-76983834 Sample_02_0011 Kidney A-498_wtVHL 112 5 566 51 1 0 188 PMS2P11
SE_02_020200261 chr7:76954367-76966626 Sample_02_0202 Stomach YCC7 261 7 134 12 0 0 0 PMS2P11
SE_02_024100408 chr7:76954368-76966612 Sample_02_0241 Colon V456 408 8 134 12 0 0 0 PMS2P11
SE_02_023700612 chr7:76954382-76985208 Sample_02_0237 Colon V389 612 10 572 52 1 0 188 PMS2P11
SE_02_014400308 chr7:76955348-76993544 Sample_02_0144 Peripheral blood MV411_DMSO 308 5 685 57 1 0 291 PMS2P11,LOC100132832
SE_02_001000307 chr7:76955385-76967351 Sample_02_0010 Kidney A-498_emptyvector 307 2 135 12 0 0 0 PMS2P11
SE_02_012800438 chr7:76955513-76999131 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 438 12 786 62 1 0 291 PMS2P11,LOC100132832
SE_02_003600375 chr7:76956035-77010911 Sample_02_0036 Embryo H7 375 16 1166 98 3 0 779 PMS2P11,LOC100132832
SE_02_006500092 chr7:76956218-77011085 Sample_02_0065 Embryo KO2-Late_G1 92 8 1168 98 3 0 779 PMS2P11,LOC100132832
SE_02_041800004 chr7:76956447-77010523 Sample_02_0418 Embryo H9_Null+EZH2 4 16 1152 97 2 0 779 PMS2P11,LOC100132832
SE_02_029400159 chr7:76956450-77011540 Sample_02_0294 Pancreatic L3-6_DMSO 159 5 1175 99 3 0 779 PMS2P11,LOC100132832
SE_02_022800040 chr7:76956498-77011194 Sample_02_0228 Oesophagus KYSE510 40 8 1165 99 3 0 779 PMS2P11,LOC100132832
SE_02_025600305 chr7:76956515-77007114 Sample_02_0256 Peripheral blood MV411 305 10 1052 83 1 0 779 PMS2P11,LOC100132832
SE_02_025500173 chr7:76956516-77005307 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 173 9 1004 79 1 0 610 PMS2P11,LOC100132832
SE_00_001100169 chr7:76956535-77008471 Sample_00_0011 Esophagus esophagus 169 13 1098 88 2 0 779 PMS2P11,LOC100132832
SE_02_029500331 chr7:76956542-76968705 Sample_02_0295 Lung A549_TGFBeta_72h 331 5 152 18 0 0 0 PMS2P11
SE_02_019100201 chr7:76956597-76966362 Sample_02_0191 Stomach SNU719 201 4 104 9 0 0 0 PMS2P11
SE_02_010100469 chr7:76959108-77000688 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 469 5 800 63 1 0 380 PMS2P11,LOC100132832
SE_02_010000640 chr7:76959258-77000690 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 640 7 800 63 1 0 380 PMS2P11,LOC100132832
SE_02_009700389 chr7:76959277-76984875 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 389 8 524 49 1 0 188 PMS2P11
SE_02_010200706 chr7:76959315-76987017 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 706 6 549 51 1 0 188 PMS2P11
SE_02_005600198 chr7:76959352-77011362 Sample_02_0056 Mammary gland HMEC 198 9 1157 99 3 0 779 PMS2P11,LOC100132832
SE_01_007500944 chr7:76959361-76985140 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 944 6 528 49 1 0 188 PMS2P11
SE_02_010300335 chr7:76959372-76993420 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 335 6 654 56 1 0 291 PMS2P11,LOC100132832
SE_02_006300123 chr7:76959467-77011335 Sample_02_0063 Skin Keratinocytes 123 6 1157 99 3 0 779 PMS2P11,LOC100132832
SE_02_039600050 chr7:76959512-77011333 Sample_02_0396 Skin NHEK-D 50 12 1157 99 3 0 779 PMS2P11,LOC100132832
SE_01_004100227 chr7:76959514-76985136 Sample_01_0041 Skin keratinocyte 227 5 528 49 1 0 188 PMS2P11
SE_02_010600152 chr7:76959523-76978893 Sample_02_0106 Skin NHEK_M 152 6 382 40 1 0 0 PMS2P11
SE_01_002200200 chr7:76959594-76963317 Sample_01_0022 Prostate C4-2B 200 2 41 7 0 0 0 PMS2P11
SE_02_001900472 chr7:76959640-77007100 Sample_02_0019 Embryo Neural crest cells 472 15 1036 83 1 0 779 PMS2P11,LOC100132832
SE_02_016200334 chr7:76959663-76963717 Sample_02_0162 Prostate C4-2B_vehicle_24h 334 1 50 9 0 0 0 PMS2P11
SE_02_016300359 chr7:76959684-76962834 Sample_02_0163 Prostate C4-2B_SR2211_24h 359 2 25 5 0 0 0 PMS2P11
SE_02_026600078 chr7:76959742-76983894 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 78 5 520 48 1 0 188 PMS2P11
SE_02_021500006 chr7:76959826-77009588 Sample_02_0215 Skin NHEK_siGRHL3 6 15 1108 91 2 0 779 PMS2P11,LOC100132832
SE_02_003000448 chr7:76960283-76966317 Sample_02_0030 Kidney human kidney proximal tubule cells 448 3 89 9 0 0 0 PMS2P11
SE_02_001700219 chr7:76974082-77010925 Sample_02_0017 Embryo H9_ESC 219 7 885 72 3 0 779 PMS2P11,LOC100132832
SE_02_021400003 chr7:76974321-77004980 Sample_02_0214 Embryo H9_WT 3 4 725 53 1 0 610 PMS2P11,LOC100132832
SE_02_022600465 chr7:76982150-76987659 Sample_02_0226 Blood KOPTK1 465 1 46 6 0 0 0 PMS2P11
SE_00_004500307 chr7:76982352-76999975 Sample_00_0045 Thymus thymus 307 3 278 16 0 0 103 PMS2P11,LOC100132832
SE_02_033700602 chr7:76982502-76994002 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 602 2 167 12 0 0 103 PMS2P11,LOC100132832
SE_00_001001246 chr7:76983506-77005859 Sample_00_0010 Embryo endodermal-cell 1246 7 484 31 0 0 553 PMS2P11,LOC100132832
SE_01_006000070 chr7:76991642-77006855 Sample_01_0060 Embryo radial-glial-cell 70 2 404 29 0 0 488 PMS2P11,LOC100132832
SE_02_029300467 chr7:76991679-77011199 Sample_02_0293 Pancreatic L3-6_4SC-202 467 2 528 46 2 0 488 PMS2P11,LOC100132832
SE_02_010600486 chr7:76994379-77007015 Sample_02_0106 Skin NHEK_M 486 2 343 24 0 0 488 PMS2P11,LOC100132832
SE_01_000600538 chr7:76998272-77011758 Sample_01_0006 Lung A549_ethanol_1h 538 2 412 39 2 0 490 PMS2P11,LOC100132832
SE_02_035800571 chr7:76999040-77011711 Sample_02_0358 Colon LS180 571 1 404 39 2 0 489 PMS2P11,LOC100132832
SE_02_035600427 chr7:76999853-77011590 Sample_02_0356 Colon Sw480 427 2 381 38 2 0 488 PMS2P11,LOC100132832
SE_02_029500246 chr7:77000065-77011112 Sample_02_0295 Lung A549_TGFBeta_72h 246 1 360 36 2 0 488 PMS2P11,LOC100132832
SE_02_001100287 chr7:77000960-77011752 Sample_02_0011 Kidney A-498_wtVHL 287 2 355 37 2 0 401 PMS2P11,LOC100132832
SE_02_026800728 chr7:77002142-77011781 Sample_02_0268 Kidney A-498 728 5 318 34 2 0 371 PMS2P11,LOC100132832
SE_02_024100592 chr7:77002307-77011131 Sample_02_0241 Colon V456 592 4 292 29 2 0 342 PMS2P11,LOC100132832
SE_02_001001077 chr7:77004688-77011262 Sample_02_0010 Kidney A-498_emptyvector 1077 2 191 20 2 0 169 PMS2P11,LOC100132832
Genomic distribution of SEs associated with PMS2P11
Genome Browser

The strength of the tissue affected by the gene

Expression of PMS2P11

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)