SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000188313
Gene: PLSCR1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:146515180-146544856 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_004300422 chr3:146404277-146412648 Sample_02_0043 Embryo endodermal CyT49_ES_D2 422 4 253 23 0 0 0 PLSCR2,PLSCR1
SE_02_023600213 chr3:146498928-146518927 Sample_02_0236 Colon V206 213 9 503 23 1 9 96 PLSCR1,PLSCR2
SE_02_074800026 chr3:146500840-146546106 Sample_02_0748 Mammary gland HCC1599_WO 26 10 1189 135 3 44 548 PLSCR1,PLSCR2
SE_02_074900031 chr3:146501633-146546187 Sample_02_0749 Mammary gland HCC1599_GSI 31 12 1167 134 3 43 548 PLSCR1,PLSCR2
SE_02_009700718 chr3:146502361-146508055 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 718 2 142 3 0 1 0 PLSCR1,PLSCR2
SE_02_004000928 chr3:146502404-146523554 Sample_02_0040 Embryo PFG 928 4 542 38 1 21 163 PLSCR1,PLSCR2
SE_02_019600290 chr3:146502409-146507183 Sample_02_0196 Stomach NCC59 290 3 125 3 0 1 0 PLSCR1,PLSCR2
SE_02_012400304 chr3:146502457-146545581 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 304 4 1136 129 3 43 548 PLSCR1,PLSCR2
SE_02_003800199 chr3:146502694-146554999 Sample_02_0038 Embryo DE 199 10 1409 168 4 45 548 PLSCR1,PLSCR2
SE_02_151300802 chr3:146502695-146519059 Sample_02_1513 Lung Transitional AT2->1 cells 802 4 417 19 1 8 96 PLSCR1,PLSCR2
SE_02_105100626 chr3:146502711-146542456 Sample_02_1051 Esophagus Eso26 626 11 1021 106 3 37 379 PLSCR1,PLSCR2
SE_02_098900669 chr3:146502945-146545444 Sample_02_0989 Kidney kidney cortex_WT 669 10 1119 127 3 43 548 PLSCR1,PLSCR2
SE_02_101601046 chr3:146503285-146537262 Sample_02_1016 Embryo H9_Mesendoderm_24h 1046 6 861 72 1 32 328 PLSCR1,PLSCR2
SE_02_117201069 chr3:146503468-146533324 Sample_02_1172 Embryo H9 WT 1069 7 767 61 1 30 285 PLSCR1,PLSCR2
SE_00_002401036 chr3:146503475-146528947 Sample_00_0024 Embryo mesendoderm 1036 7 647 50 1 24 280 PLSCR1,PLSCR2
SE_02_101500939 chr3:146503559-146550144 Sample_02_1015 Embryo H9_ Undifferentiated 939 12 1238 153 3 43 548 PLSCR1,PLSCR2
SE_02_004300695 chr3:146503808-146528944 Sample_02_0043 Embryo endodermal CyT49_ES_D2 695 9 640 50 1 24 280 PLSCR1,PLSCR2
SE_02_075200113 chr3:146504027-146556649 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 113 9 1432 174 4 46 548 PLSCR1,PLSCR5,PLSCR2
SE_02_075500460 chr3:146504358-146555623 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 460 12 1391 169 4 46 548 PLSCR1,PLSCR2
SE_00_002000953 chr3:146505941-146545725 Sample_00_0020 Large intestine large-intestine_108d 953 7 1047 128 3 42 548 PLSCR1,PLSCR2
SE_02_092800357 chr3:146506200-146561323 Sample_02_0928 Peripheral blood neutrophils_Ecoli 357 18 1503 190 4 45 548 PLSCR1,PLSCR5,PLSCR2
SE_02_024400047 chr3:146506557-146551072 Sample_02_0244 Foreskin foreskin_D11 47 6 1183 155 4 42 548 PLSCR1,PLSCR2
SE_02_146800954 chr3:146513974-146554617 Sample_02_1468 Blood HUDEP-2_WT 954 13 1112 163 4 42 548 PLSCR1,PLSCR2
SE_02_141001648 chr3:146524778-146551097 Sample_02_1410 Brain GSC6 1648 6 722 118 3 22 385 PLSCR1,PLSCR2
SE_02_010400666 chr3:146536218-146559985 Sample_02_0104 Blood neutrophils 666 6 700 118 3 14 243 PLSCR1,PLSCR2,PLSCR5
SE_02_082601642 chr3:146536269-146550271 Sample_02_0826 Stomach gastric tumor 1642 7 402 84 2 11 243 PLSCR1,PLSCR2
SE_02_130800685 chr3:146536345-146545581 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 685 4 267 58 2 11 243 PLSCR1,PLSCR2
SE_02_130900381 chr3:146536415-146545575 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 381 2 266 58 2 11 241 PLSCR1,PLSCR2
SE_02_117401167 chr3:146536529-146545088 Sample_02_1174 Brain GBM02 1167 4 256 55 2 11 238 PLSCR1,PLSCR2
SE_02_081601079 chr3:146536555-146551038 Sample_02_0816 Ovary Clear cell ovarian cancer 1079 7 418 86 3 11 237 PLSCR1,PLSCR2
SE_02_119900774 chr3:146536557-146551284 Sample_02_1199 Brain GBM35 774 5 430 86 3 11 237 PLSCR1,PLSCR2
SE_02_157300847 chr3:146536700-146551265 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 847 4 427 85 3 11 226 PLSCR1,PLSCR2
SE_02_146001126 chr3:146536759-146554727 Sample_02_1460 Blood Mutz-3 1126 3 537 96 3 13 220 PLSCR1,PLSCR2
SE_02_010000485 chr3:146539134-146545744 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 485 1 200 48 2 9 198 PLSCR1,PLSCR2
SE_02_153100528 chr3:146539211-146560060 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 528 7 625 106 3 12 198 PLSCR1,PLSCR5,PLSCR2
SE_02_122301015 chr3:146539570-146562663 Sample_02_1223 Bone marrow KMS28BM 1015 9 687 108 3 12 198 PLSCR1,PLSCR5,PLSCR2
SE_02_134800252 chr3:146539865-146545541 Sample_02_1348 Leukophereses leukophereses_p408 252 2 174 38 1 9 198 PLSCR1,PLSCR2
SE_02_149300700 chr3:146540383-146559234 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 700 4 577 93 2 12 198 PLSCR1,PLSCR5,PLSCR2
SE_02_128001065 chr3:146540455-146550960 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1065 3 312 62 2 9 198 PLSCR1,PLSCR2
SE_02_072100745 chr3:146540565-146546020 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 745 3 167 36 1 9 198 PLSCR1,PLSCR2
SE_02_064501172 chr3:146540635-146545694 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1172 3 159 35 1 9 198 PLSCR1,PLSCR2
SE_02_065000458 chr3:146541111-146545776 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 458 3 145 29 0 8 183 PLSCR1,PLSCR2
SE_02_035900689 chr3:146541215-146553468 Sample_02_0359 Colon Colo741 689 2 367 61 1 9 176 PLSCR1,PLSCR2
SE_02_018400886 chr3:146541569-146553328 Sample_02_0184 Skin SKMEL30 886 2 356 59 1 7 169 PLSCR1,PLSCR2
SE_02_061500735 chr3:146542131-146562550 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 735 5 615 89 1 9 169 PLSCR1,PLSCR5,PLSCR2
SE_02_012400687 chr3:146578730-146584558 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 687 1 139 5 0 11 0 PLSCR1,PLSCR5
SE_02_064502343 chr3:146580102-146583111 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2343 2 76 1 0 3 0 PLSCR5,PLSCR1
SE_02_064601418 chr3:146580706-146582890 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1418 1 51 1 0 2 0 PLSCR5,PLSCR1
SE_02_055200393 chr3:146745881-146757962 Sample_02_0552 Other SYO1 shCt 393 7 275 4 0 23 0 PLSCR5,PLSCR1
SE_02_014000248 chr3:146793846-146820657 Sample_02_0140 Kidney RT242 248 5 668 4 1 145 0 PLSCR5,PLSCR1
SE_02_105800640 chr3:146794185-146820041 Sample_02_1058 Bone A673_SA2 Rescue 640 11 651 4 1 144 0 PLSCR5,PLSCR1
SE_02_063500178 chr3:146794306-146819116 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 178 17 625 4 1 144 0 PLSCR5,PLSCR1
SE_02_055200156 chr3:146794411-146816870 Sample_02_0552 Other SYO1 shCt 156 18 566 3 1 82 0 PLSCR5,PLSCR1
SE_02_021000624 chr3:146794429-146817982 Sample_02_0210 Lung MRC-5_N_1DPT 624 7 589 3 1 117 0 PLSCR5,PLSCR1
SE_02_083901049 chr3:146797692-146818789 Sample_02_0839 Embryo hNPCs_K755R/+ 1049 11 554 2 1 122 0 PLSCR5,PLSCR1
SE_02_084001404 chr3:146800939-146819135 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1404 8 467 2 1 143 0 PLSCR5,PLSCR1
SE_02_060500998 chr3:146801539-146827968 Sample_02_0605 Skin Skin Fibroblast_DMSO 998 5 669 3 3 148 0 PLSCR5,PLSCR1
SE_02_063600686 chr3:146801880-146827873 Sample_02_0636 Skin BJ5ta 686 7 657 3 3 148 0 PLSCR5,PLSCR1
SE_02_060601133 chr3:146801881-146828015 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1133 8 662 3 3 148 0 PLSCR5,PLSCR1
SE_02_141001619 chr3:146953302-146970583 Sample_02_1410 Brain GSC6 1619 4 487 0 1 62 0 PLSCR5,PLSCR1
SE_02_156600387 chr3:146953900-146974340 Sample_02_1566 Dermal Dermal fibroblast 387 2 571 1 1 52 0 PLSCR5,PLSCR1
SE_02_126301741 chr3:146966451-146973862 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1741 3 191 1 0 9 0 PLSCR5,PLSCR1
SE_02_020901049 chr3:147294181-147307160 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1049 5 293 4 1 85 0 ZIC4,PLSCR1
SE_02_137801004 chr3:147297107-147307299 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1004 6 235 4 1 53 0 ZIC4,PLSCR1
SE_02_156800721 chr3:147297354-147314803 Sample_02_1568 Heart Cardiac progenitor cells 721 3 394 5 1 139 0 ZIC4,PLSCR1
Genomic distribution of SEs associated with PLSCR1
Genome Browser

The strength of the tissue affected by the gene

Expression of PLSCR1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)