SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000153404
Gene: PLEKHG4B Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:92151-189972 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_059000002 chr5:10000-11870 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 2 1 47 0 0 0 0 PLEKHG4B
SE_02_074501037 chr5:10001-13632 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1037 3 134 3 0 0 0 PLEKHG4B
SE_02_058900002 chr5:10008-11862 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 2 1 47 0 0 0 0 PLEKHG4B
SE_02_096900460 chr5:10013-11821 Sample_02_0969 Brain H3.3K27M_PL637 460 1 47 0 0 0 0 PLEKHG4B
SE_02_075800663 chr5:10015-11807 Sample_02_0758 Peripheral blood REH 663 1 47 0 0 0 0 PLEKHG4B
SE_02_107100311 chr5:10016-11590 Sample_02_1071 Blood Jurkat_WT 311 1 47 0 0 0 0 PLEKHG4B
SE_02_142100032 chr5:10029-11774 Sample_02_1421 Brain NHA 32 1 47 0 0 0 0 PLEKHG4B
SE_02_141600713 chr5:10032-11781 Sample_02_1416 Brain SF9402 713 1 47 0 0 0 0 PLEKHG4B
SE_02_152800010 chr5:11339-11772 Sample_02_1528 Embryo Primed embryonic stem cells 10 1 0 0 0 0 0 PLEKHG4B
SE_02_157900326 chr5:150177-173810 Sample_02_1579 Renal 786-M1A 326 9 898 84 0 0 1150 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_158000365 chr5:150874-175289 Sample_02_1580 Renal 786-O 365 12 917 95 0 0 1274 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_001200199 chr5:151912-171201 Sample_02_0012 Kidney 786-O_non-targeting 199 4 727 64 0 0 929 PLEKHG4B,LRRC14B,CCDC127,SDHA
SE_02_026700237 chr5:152039-171284 Sample_02_0267 Kidney 786-O 237 6 727 64 0 0 949 PLEKHG4B,LRRC14B,CCDC127,SDHA
SE_02_060900242 chr5:152088-171614 Sample_02_0609 Liposarcoma LPS141 242 10 739 66 0 0 1011 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_046700048 chr5:152350-169960 Sample_02_0467 Kidney 786-O_control 48 8 673 58 0 0 856 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_061501075 chr5:153183-176380 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1075 4 890 90 0 0 1234 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_000900223 chr5:153753-171110 Sample_02_0009 Kidney 786-O_wtVHL 223 5 676 53 0 0 902 PLEKHG4B,LRRC14B,CCDC127,SDHA
SE_02_114500880 chr5:157901-172314 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 880 12 573 43 0 0 685 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_043700507 chr5:158643-169931 Sample_02_0437 Bone 143B 507 8 456 34 0 0 522 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_061000505 chr5:159083-171095 Sample_02_0610 Liposarcoma MLS 1765-92 505 2 479 35 0 0 567 PLEKHG4B,LRRC14B,SDHA,CCDC127
SE_02_093400137 chr5:72425-93026 Sample_02_0934 Embryo H7-WT 137 9 627 43 1 0 0 PLEKHG4B
SE_02_093100424 chr5:72652-93764 Sample_02_0931 Embryo H9 UTXKO 424 8 639 44 1 0 0 PLEKHG4B
SE_02_093300294 chr5:72695-92714 Sample_02_0933 Embryo H7 UTXKO 294 9 610 42 1 0 0 PLEKHG4B
SE_02_011400424 chr5:72791-111472 Sample_02_0114 Mammary gland CAL51 424 9 1174 92 2 0 0 PLEKHG4B
SE_02_039700441 chr5:77440-108153 Sample_02_0397 Mammary gland CAL51-MCF-7 441 6 904 76 2 0 0 PLEKHG4B
SE_02_081000506 chr5:81678-95933 Sample_02_0810 Mammary gland T47D noSerum 506 9 400 24 1 0 0 PLEKHG4B
Genomic distribution of SEs associated with PLEKHG4B
Genome Browser

The strength of the tissue affected by the gene

Expression of PLEKHG4B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)