SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000008710
Gene: PKD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:2088708-2135898 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101701983 chr16:2115124-2130598 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1983 6 581 44 0 78 1256 PKD1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
SE_02_138400316 chr16:2115195-2130816 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 316 5 589 46 0 78 1251 PKD1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
SE_02_043600328 chr16:2116201-2131572 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 328 3 559 42 0 67 974 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008600188 chr16:2120000-2134025 Sample_01_0086 Thoracic aorta thoracic-aorta 188 2 459 37 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008300206 chr16:2120145-2133944 Sample_01_0083 Sigmoid colon sigmoid-colon 206 3 453 37 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007000198 chr16:2120223-2131530 Sample_01_0070 Ascending aorta ascending-aorta 198 1 397 35 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008900178 chr16:2120225-2133980 Sample_01_0089 Transverse colon transverse-colon 178 2 449 37 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007600761 chr16:2120265-2134163 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 761 2 449 37 0 22 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_036700306 chr16:2120354-2128099 Sample_02_0367 Skeletal muscle NS129 306 1 299 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007400225 chr16:2120357-2134078 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 225 3 446 36 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007800200 chr16:2120365-2134105 Sample_01_0078 Heart left ventricle heart-left-ventricle 200 2 446 36 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_036800184 chr16:2120369-2128019 Sample_02_0368 Skeletal muscle NS134 184 1 299 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007700189 chr16:2120399-2134040 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 189 3 442 36 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_009100179 chr16:2120415-2134031 Sample_01_0091 Uterus uterus 179 3 442 36 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008000409 chr16:2120735-2131266 Sample_01_0080 Prostate prostate 409 1 368 33 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_009200194 chr16:2120806-2133913 Sample_01_0092 Vagina vagina 194 2 426 35 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_011001166 chr16:2120973-2131109 Sample_02_0110 Ovaries IOE11 1166 1 355 33 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_003200169 chr16:2120975-2131336 Sample_00_0032 Psoas muscle psoas-muscle_30y 169 2 360 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_034100422 chr16:2121015-2131400 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 422 2 360 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007500534 chr16:2121036-2134072 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 534 3 421 34 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_034000179 chr16:2121075-2130438 Sample_02_0340 Brain BE2C_2 179 2 328 29 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_006100224 chr16:2121100-2128054 Sample_01_0061 Prostate RWPE1 224 1 269 25 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008100935 chr16:2121190-2133968 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 935 3 411 34 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_027700216 chr16:2121206-2131586 Sample_02_0277 Retina FW18 216 1 360 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_008800932 chr16:2121248-2133920 Sample_01_0088 Tibial nerve tibial-nerve 932 4 407 34 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_001700164 chr16:2121308-2131366 Sample_02_0017 Embryo H9_ESC 164 3 346 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_042100262 chr16:2121316-2129059 Sample_02_0421 Brain BE2C_3 262 2 282 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_003300099 chr16:2121317-2128883 Sample_00_0033 Psoas muscle psoas-muscle_3y 99 1 277 26 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_002500222 chr16:2121320-2130772 Sample_00_0025 Muscle of leg muscle-of-leg 222 3 330 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_027800346 chr16:2121359-2131411 Sample_02_0278 Retina FW24 346 2 344 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007200556 chr16:2121366-2133915 Sample_01_0072 Breast epithelium breast-epithelium 556 2 400 34 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_009000919 chr16:2121371-2131157 Sample_01_0090 Lung upper-lobe-of-left-lung 919 2 339 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_001900268 chr16:2121389-2131356 Sample_02_0019 Embryo Neural crest cells 268 3 342 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_039600832 chr16:2121398-2128011 Sample_02_0396 Skin NHEK-D 832 1 257 25 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_025100153 chr16:2121409-2129447 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 153 2 285 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_001500761 chr16:2121415-2128982 Sample_00_0015 Lung IMR-90 761 2 275 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_025300294 chr16:2121433-2129279 Sample_02_0253 Brain BE2C_DMSO 294 1 280 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_025000085 chr16:2121436-2131408 Sample_02_0250 Brain tumormodel3691 85 2 341 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_007300320 chr16:2121454-2133920 Sample_01_0073 Coronary artery coronary-artery 320 3 398 34 0 21 197 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_002100625 chr16:2121479-2127942 Sample_00_0021 Lung lung_3y 625 1 252 25 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_00_003800450 chr16:2121492-2129019 Sample_00_0038 Spinal cord spinal-cord_108d 450 3 275 27 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_038000505 chr16:2121504-2131708 Sample_02_0380 Skeletal muscle RH18 505 2 350 32 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_027400552 chr16:2121615-2130657 Sample_02_0274 Endometriosis hTERT_KD 552 2 315 29 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_124300021 chr16:2121753-2129051 Sample_02_1243 Brain KCNR_Ethanol 21 3 268 26 0 20 112 PKD1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
SE_02_007600268 chr16:2121766-2128930 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 268 2 263 26 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_035900515 chr16:2121965-2131177 Sample_02_0359 Colon Colo741 515 2 320 31 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_003701329 chr16:2122637-2130209 Sample_01_0037 Liver hepatocyte 1329 2 268 28 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_005400695 chr16:2122749-2130585 Sample_02_0054 Lung IMR-90_DMSO_1 695 1 278 29 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_036900660 chr16:2122984-2131508 Sample_02_0369 Skeletal muscle RD 660 2 295 31 0 19 85 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_037900660 chr16:2122984-2131508 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 660 2 295 31 0 19 85 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_01_002100740 chr16:2123265-2131546 Sample_01_0021 Skin bipolar-neuron 740 3 290 29 0 19 2 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_074501472 chr16:2124043-2129041 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1472 2 185 22 0 19 0 PKD1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
Genomic distribution of SEs associated with PKD1
Genome Browser

The strength of the tissue affected by the gene

Expression of PKD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)