SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID:
Gene: PCNXL3 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_081800615 chr11:65606503-65630155 Sample_02_0818 Ovary High-grade serous ovarian cancer 615 7 717 40 2 396 3495 MAP3K11,PCNXL3,LTBP3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690
SE_00_005100717 chr11:65606579-65629970 Sample_00_0051 Adrenal gland adrenal gland 30y 717 8 712 40 2 396 3474 MAP3K11,PCNXL3,LTBP3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690
SE_02_138200550 chr11:65606625-65632159 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 550 12 772 45 2 411 3587 MAP3K11,PCNXL3,LTBP3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690
SE_02_151900164 chr11:65606653-65626133 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 164 4 593 36 2 345 2838 MAP3K11,PCNXL3,LTBP3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690,SLC25A45,CFL1
SE_02_133300223 chr11:65610625-65634401 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 223 4 749 47 2 379 3247 MAP3K11,PCNXL3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690
SE_02_133400376 chr11:65611117-65619794 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 376 4 268 15 1 219 1255 MAP3K11,PCNXL3,EHBP1L1,SIPA1,KCNK7,FAM89B,MIR4489,RELA,SSSCA1,SSSCA1-AS1,MIR4690
Genomic distribution of SEs associated with PCNXL3
Genome Browser

The strength of the tissue affected by the gene

Expression of PCNXL3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)