SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000140396
Gene: NCOA2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr8:70109782-70403808 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139200577 chr8:70114032-70160779 Sample_02_1392 Peripheral blood Mac-2A_ALK- 577 12 1129 41 2 180 932 NCOA2,PRDM14
SE_02_023400868 chr8:70126288-70182824 Sample_02_0234 Tonsil Th17 868 14 1384 59 6 217 981 NCOA2,PRDM14
SE_02_138800412 chr8:70126397-70160708 Sample_02_1388 Peripheral blood JB6_ALK+ 412 7 806 32 2 151 730 NCOA2,PRDM14
SE_02_045700397 chr8:70127368-70153831 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 397 11 635 24 1 73 400 NCOA2,PRDM14
SE_02_045600485 chr8:70127468-70172705 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 485 17 1085 43 5 155 865 NCOA2,PRDM14
SE_02_045500273 chr8:70127707-70160738 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 273 15 760 30 2 138 648 NCOA2,PRDM14
SE_02_142901053 chr8:70130754-70195167 Sample_02_1429 Blood GM12878_WT 1053 12 1571 63 8 207 801 NCOA2,PRDM14
SE_02_017201211 chr8:70147220-70247544 Sample_02_0172 Lung IMR-90_quiescent 1211 17 2503 80 10 231 609 NCOA2,PRDM14
SE_02_030700509 chr8:70172074-70195300 Sample_02_0307 Neuroblastoma SJNB12 509 4 590 23 3 64 34 NCOA2,PRDM14
SE_02_148500199 chr8:70178175-70227970 Sample_02_1485 Bone SK-ES-1 199 17 1254 33 4 88 54 NCOA2,PRDM14
SE_02_129100136 chr8:70180495-70195572 Sample_02_1291 Lung NCI-H889_p8-15 136 8 369 10 2 27 0 NCOA2,PRDM14
SE_02_147700382 chr8:70180628-70204219 Sample_02_1477 Bone EW-22 382 8 595 13 2 22 0 NCOA2,PRDM14
SE_02_044500622 chr8:70210245-70290098 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 622 27 2058 83 5 79 54 NCOA2
SE_02_122400822 chr8:70212142-70229857 Sample_02_1224 Bone marrow normal plasma cell 822 7 470 10 2 43 54 NCOA2,PRDM14
SE_02_074800289 chr8:70212363-70248442 Sample_02_0748 Mammary gland HCC1599_WO 289 6 956 26 3 62 54 NCOA2,PRDM14
SE_02_074900255 chr8:70212695-70260303 Sample_02_0749 Mammary gland HCC1599_GSI 255 7 1273 45 4 67 54 NCOA2,PRDM14
SE_02_115300065 chr8:70244648-70404412 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 65 33 4079 195 4 246 134 NCOA2
SE_02_078100473 chr8:70284510-70402831 Sample_02_0781 Lymphoma Pfeiffer_DMSO 473 53 3040 138 2 158 14 NCOA2
SE_02_011900173 chr8:70285813-70349035 Sample_02_0119 Haematopoietic and lymphoid tissue PFEIFFER 173 42 1639 80 1 55 14 NCOA2
SE_02_032501188 chr8:70286092-70353034 Sample_02_0325 Liver hepatocytes_d1 1188 11 1725 80 1 56 14 NCOA2
SE_02_115400058 chr8:70286614-70404605 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 58 27 3019 137 2 217 134 NCOA2
SE_02_130200099 chr8:70286805-70404283 Sample_02_1302 Lymphoma RL DMSO 99 47 3002 136 2 217 134 NCOA2
SE_02_130300076 chr8:70289060-70404429 Sample_02_1303 Lymphoma RL_tazemetostat 76 59 2947 135 2 217 134 NCOA2
SE_02_130400126 chr8:70300176-70402064 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 126 50 2616 120 1 121 0 NCOA2
SE_02_021300553 chr8:70304631-70381333 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 553 9 1950 96 1 88 0 NCOA2
SE_02_044500298 chr8:70305230-70402857 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 298 44 2508 118 1 154 0 NCOA2
SE_02_044400420 chr8:70308529-70405314 Sample_02_0444 Bone osteosarcoma tumor P10 420 32 2469 119 1 212 120 NCOA2
SE_02_151200508 chr8:70312672-70333011 Sample_02_1512 Lung Purified AT2 cells 508 6 511 31 0 30 0 NCOA2
SE_02_153300532 chr8:70313052-70333011 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 532 5 501 29 0 30 0 NCOA2
SE_02_006500619 chr8:70314197-70345598 Sample_02_0065 Embryo KO2-Late_G1 619 4 786 46 0 36 0 NCOA2
SE_02_077001145 chr8:70314723-70348189 Sample_02_0770 Ovary OVCA429_shLuc 1145 15 854 51 0 39 0 NCOA2
SE_00_000301423 chr8:70328724-70375999 Sample_00_0003 Adrenal gland adrenal-gland_97d 1423 8 1192 64 1 47 0 NCOA2
SE_02_003300699 chr8:70330043-70402922 Sample_02_0033 Pancreas pancreatic-islets-F 699 12 1856 88 1 124 0 NCOA2
SE_02_147700934 chr8:70331056-70354631 Sample_02_1477 Bone EW-22 934 4 601 33 0 20 0 NCOA2
SE_02_142900644 chr8:70331877-70402642 Sample_02_1429 Blood GM12878_WT 644 17 1796 83 1 113 0 NCOA2
SE_02_103400406 chr8:70363525-70404879 Sample_02_1034 Blood AML cell 406 8 1025 42 0 146 120 NCOA2
SE_02_108300538 chr8:70365623-70404984 Sample_02_1083 Macula macula 538 6 972 39 0 147 120 NCOA2
SE_02_101500996 chr8:70365721-70404688 Sample_02_1015 Embryo H9_ Undifferentiated 996 5 960 39 0 146 120 NCOA2
SE_02_006500296 chr8:70366503-70401460 Sample_02_0065 Embryo KO2-Late_G1 296 7 857 34 0 49 0 NCOA2
SE_01_009500789 chr8:70373164-70404947 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 789 5 804 32 0 133 120 NCOA2
SE_02_003900608 chr8:70385759-70405276 Sample_02_0039 Embryo AFG 608 3 522 16 0 120 120 NCOA2
SE_02_003800969 chr8:70387211-70405099 Sample_02_0038 Embryo DE 969 4 474 15 0 120 120 NCOA2
SE_02_004000766 chr8:70387703-70418624 Sample_02_0040 Embryo PFG 766 4 790 29 0 126 120 NCOA2
SE_02_101701909 chr8:70387769-70404864 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1909 5 445 14 0 119 120 NCOA2
SE_02_003601282 chr8:70392874-70404945 Sample_02_0036 Embryo H7 1282 2 315 11 0 119 120 NCOA2
SE_02_025500336 chr8:70392887-70404848 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 336 2 309 11 0 119 120 NCOA2
SE_01_008400787 chr8:70393148-70405033 Sample_01_0084 Spleen spleen 787 2 315 11 0 120 120 NCOA2
SE_02_109800656 chr8:70393204-70404796 Sample_02_1098 Blood THP1_DMSO_noPMA 656 3 301 11 0 119 120 NCOA2
SE_02_057500545 chr8:70393549-70404643 Sample_02_0575 Blood MOLM13_sgLKB1e2 545 3 291 11 0 119 120 NCOA2
SE_02_081601498 chr8:70393584-70404761 Sample_02_0816 Ovary Clear cell ovarian cancer 1498 3 292 11 0 119 120 NCOA2
SE_02_057700740 chr8:70393591-70404584 Sample_02_0577 Blood MOLM13_empty 740 2 289 11 0 119 120 NCOA2
SE_02_057800596 chr8:70393617-70404533 Sample_02_0578 Blood MOLM-13_sgSIK3e4 596 2 285 11 0 119 120 NCOA2
SE_02_057400750 chr8:70393619-70404618 Sample_02_0574 Blood MOLM-13_sgNeg2 750 2 289 11 0 119 120 NCOA2
SE_02_099400715 chr8:70393620-70404489 Sample_02_0994 Blood MOLM13_SIK3TQ 715 3 284 11 0 119 120 NCOA2
SE_02_058200679 chr8:70393652-70404608 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 679 2 289 11 0 119 120 NCOA2
SE_02_058100571 chr8:70393694-70404574 Sample_02_0581 Blood MOLM13_empty_HG 571 2 288 11 0 119 120 NCOA2
SE_02_134700387 chr8:70393906-70404625 Sample_02_1347 Leukophereses leukophereses_p401 387 3 283 10 0 119 120 NCOA2
SE_00_005500748 chr8:70394295-70404526 Sample_00_0055 Spleen spleen 34y 748 2 265 10 0 119 120 NCOA2
SE_01_002100164 chr8:70398156-70405455 Sample_01_0021 Skin bipolar-neuron 164 1 188 7 0 108 120 NCOA2
SE_02_122200406 chr8:70400302-70405421 Sample_02_1222 Bone marrow KMS12 406 2 128 5 0 101 120 NCOA2
SE_02_042200474 chr8:70400547-70405125 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 474 1 120 4 0 99 120 NCOA2
SE_02_025900389 chr8:70400858-70404878 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 389 1 101 4 0 98 120 NCOA2
SE_02_122300317 chr8:70400876-70405407 Sample_02_1223 Bone marrow KMS28BM 317 1 113 4 0 99 120 NCOA2
SE_02_028500241 chr8:70400877-70406293 Sample_02_0285 Liver HuH7_untreat 241 1 133 6 0 100 120 NCOA2
SE_02_121900567 chr8:70400921-70405283 Sample_02_1219 Bone marrow H929 567 1 112 4 0 99 120 NCOA2
SE_02_064500513 chr8:70400993-70404708 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 513 1 93 4 0 97 120 NCOA2
SE_02_074601038 chr8:70401056-70404769 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1038 2 93 4 0 97 120 NCOA2
SE_02_097300597 chr8:70401131-70405266 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 597 1 108 4 0 98 120 NCOA2
SE_02_004900388 chr8:70401164-70405364 Sample_02_0049 Embryo endodermal CyT49_GTtoH 388 1 108 4 0 98 120 NCOA2
SE_00_003901167 chr8:70401167-70404914 Sample_00_0039 Spleen spleen_3y 1167 1 97 4 0 97 120 NCOA2
SE_02_033000879 chr8:70401198-70404917 Sample_02_0330 Endoderm MHG 879 1 96 4 0 97 120 NCOA2
SE_01_003701291 chr8:70401222-70405113 Sample_01_0037 Liver hepatocyte 1291 1 105 4 0 98 120 NCOA2
SE_02_083501141 chr8:70401226-70404632 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1141 1 87 4 0 97 120 NCOA2
SE_02_081700343 chr8:70401236-70404681 Sample_02_0817 Ovary Epithelial ovarian cancer 343 1 88 4 0 97 120 NCOA2
SE_02_122700879 chr8:70401245-70405236 Sample_02_1227 Bone marrow U266 879 1 107 4 0 98 120 NCOA2
SE_02_028600569 chr8:70401282-70406193 Sample_02_0286 Liver HuH7_IL-1alpha_1h 569 1 126 5 0 99 120 NCOA2
SE_02_025800373 chr8:70401327-70404843 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 373 1 90 3 0 97 120 NCOA2
SE_02_138801126 chr8:70401384-70404793 Sample_02_1388 Peripheral blood JB6_ALK+ 1126 1 87 3 0 97 120 NCOA2
SE_02_048700318 chr8:70401423-70404646 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 318 1 83 3 0 97 120 NCOA2
SE_02_064600463 chr8:70401428-70404540 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 463 1 78 3 0 97 120 NCOA2
SE_00_004000994 chr8:70401433-70404794 Sample_00_0040 Spleen spleen_30y 994 1 87 3 0 97 120 NCOA2
SE_02_027400730 chr8:70401469-70404612 Sample_02_0274 Endometriosis hTERT_KD 730 1 81 3 0 97 120 NCOA2
SE_02_048200346 chr8:70401499-70404643 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 346 1 83 3 0 97 120 NCOA2
SE_02_074500437 chr8:70401507-70404868 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 437 1 90 3 0 96 120 NCOA2
SE_02_055500357 chr8:70401517-70405271 Sample_02_0555 Other HAP1_WT 357 1 102 3 0 97 120 NCOA2
SE_01_010701443 chr8:70401521-70404684 Sample_01_0107 Esophagus esophagus squamous epithelium 1443 1 83 3 0 96 120 NCOA2
SE_02_058400212 chr8:70401531-70404792 Sample_02_0584 Lung H1299 WT 212 1 86 3 0 96 120 NCOA2
SE_01_010400855 chr8:70401535-70404813 Sample_01_0104 Lung upper lobe of left lung 855 1 87 3 0 96 120 NCOA2
SE_02_004800486 chr8:70401539-70405134 Sample_02_0048 Embryo endodermal CyT49_HE 486 1 99 3 0 97 120 NCOA2
SE_02_158401345 chr8:70401546-70404748 Sample_02_1584 Brain U87 GBM_Mock 1345 1 83 3 0 96 120 NCOA2
SE_02_098200503 chr8:70401560-70404741 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 503 1 82 3 0 96 120 NCOA2
SE_02_144300327 chr8:70401570-70405229 Sample_02_1443 Lung H69M 327 1 100 3 0 97 120 NCOA2
SE_02_048400326 chr8:70401574-70404652 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 326 1 81 3 0 96 120 NCOA2
SE_02_039601611 chr8:70401574-70404715 Sample_02_0396 Skin NHEK-D 1611 1 81 3 0 96 120 NCOA2
SE_02_085400534 chr8:70401576-70404900 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 534 1 89 3 0 96 120 NCOA2
SE_02_064200770 chr8:70401583-70404847 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 770 1 85 3 0 96 120 NCOA2
SE_02_075001058 chr8:70401595-70404602 Sample_02_0750 Lymphoma Rec-1_GSI 1058 1 77 3 0 96 120 NCOA2
SE_02_122000177 chr8:70401597-70405121 Sample_02_1220 Bone marrow JJN3 177 1 96 3 0 97 120 NCOA2
SE_02_064900706 chr8:70401598-70404475 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 706 1 71 3 0 96 120 NCOA2
SE_02_096600664 chr8:70401604-70404943 Sample_02_0966 Brain H3.3K27M_JN29-BS3 664 1 88 3 0 96 120 NCOA2
SE_02_064400291 chr8:70401609-70404503 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 291 1 71 3 0 96 120 NCOA2
SE_02_118900447 chr8:70401613-70404806 Sample_02_1189 Brain GBM22 447 1 83 3 0 96 120 NCOA2
SE_02_108600910 chr8:70401619-70404722 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 910 1 78 3 0 96 120 NCOA2
SE_02_065000568 chr8:70401627-70404442 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 568 1 69 3 0 96 120 NCOA2
SE_02_119700846 chr8:70401632-70404790 Sample_02_1197 Brain GBM33 846 1 82 3 0 96 120 NCOA2
SE_00_005800716 chr8:70401633-70404627 Sample_00_0058 Stomach stomach 34y 716 1 77 3 0 96 120 NCOA2
SE_02_126801035 chr8:70401640-70404459 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1035 1 69 3 0 96 120 NCOA2
SE_02_096900815 chr8:70401646-70404683 Sample_02_0969 Brain H3.3K27M_PL637 815 1 78 3 0 96 120 NCOA2
SE_02_064300666 chr8:70401646-70404939 Sample_02_0643 Mammary gland MDA-MB-436 666 1 88 3 0 96 120 NCOA2
SE_02_048500264 chr8:70401649-70404663 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 264 1 78 3 0 96 120 NCOA2
SE_02_064801311 chr8:70401661-70404536 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1311 1 72 3 0 96 120 NCOA2
SE_02_132001023 chr8:70401674-70404517 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1023 1 72 3 0 96 120 NCOA2
SE_02_081000152 chr8:70401678-70404683 Sample_02_0810 Mammary gland T47D noSerum 152 1 78 3 0 96 120 NCOA2
SE_02_132201430 chr8:70401684-70404528 Sample_02_1322 Connective Tissue HT1080_WT 1430 1 72 3 0 96 120 NCOA2
SE_02_109500784 chr8:70401685-70404695 Sample_02_1095 Blood CD34 Erythroid cells_Don002 784 1 78 3 0 96 120 NCOA2
SE_00_002401190 chr8:70401687-70404878 Sample_00_0024 Embryo mesendoderm 1190 1 85 3 0 96 120 NCOA2
SE_02_015800678 chr8:70401701-70404822 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 678 1 83 3 0 96 120 NCOA2
SE_02_004400388 chr8:70401715-70404802 Sample_02_0044 Embryo endodermal CyT49_ES_D5 388 1 81 3 0 96 120 NCOA2
SE_02_095500347 chr8:70401775-70404832 Sample_02_0955 Brain IDH1_2469 347 1 80 3 0 95 120 NCOA2
SE_02_102700526 chr8:70401777-70404762 Sample_02_1027 Esophagus KYSE180_1 526 1 76 3 0 95 120 NCOA2
SE_02_047701275 chr8:70401783-70404806 Sample_02_0477 Colon intestinal epithelial organoids_139a 1275 1 80 3 0 95 120 NCOA2
Genomic distribution of SEs associated with NCOA2
Genome Browser

The strength of the tissue affected by the gene

Expression of NCOA2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)