SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000109065
Gene: NAT9 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:74770529-74776367 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103501347 chr17:74749990-74778984 Sample_02_1035 Mammary gland HCC70_Vehicle 1347 21 878 59 4 132 1688 TMEM104,SLC9A3R1,NAT9,RAB37,MIR3615,CD300LF
SE_02_117500664 chr17:74751449-74780784 Sample_02_1175 Brain GBM03 664 9 891 63 4 115 1688 TMEM104,SLC9A3R1,NAT9,RAB37,MIR3615,CD300LF
SE_02_103601667 chr17:74751555-74792178 Sample_02_1036 Mammary gland HCC70_XY018 1667 20 1250 102 8 134 2043 TMEM104,SLC9A3R1,NAT9,RAB37,MIR3615,CD300LF
SE_02_146400275 chr17:74753042-74773852 Sample_02_1464 Ovary CAOV4 275 9 643 39 4 82 1292 NAT9,SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF
SE_02_150300588 chr17:74756009-74770154 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 588 1 430 19 2 61 699 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_00_003600833 chr17:74756548-74771824 Sample_00_0036 Small intestine small-intestine_108days 833 1 474 26 2 67 1008 NAT9,SLC9A3R1,CD300LF,RAB37,TMEM104,MIR3615
SE_00_002000879 chr17:74756557-74773327 Sample_00_0020 Large intestine large-intestine_108d 879 1 528 32 2 80 1206 NAT9,SLC9A3R1,CD300LF,RAB37,TMEM104,MIR3615
SE_02_100500315 chr17:74756957-74768363 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 315 3 331 15 1 56 458 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_066500349 chr17:74757349-74768363 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 349 4 319 15 1 53 458 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_138400650 chr17:74757547-74768616 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 650 4 325 15 1 54 518 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_082200599 chr17:74757589-74787556 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 599 7 918 78 5 117 1797 TMEM104,SLC9A3R1,NAT9,RAB37,MIR3615,CD300LF
SE_02_051300078 chr17:74757748-74770416 Sample_02_0513 Prostate LNCaP95_shARfl_ETOH 78 4 398 19 2 57 714 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_114100189 chr17:74758108-74768400 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 189 3 301 14 1 53 465 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_077501256 chr17:74761979-74766650 Sample_02_0775 Pancreas EndoC-BH1_SE 1256 1 150 7 1 22 240 SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF,NAT9
SE_02_118100616 chr17:74762670-74770566 Sample_02_1181 Brain GBM10 616 1 282 14 1 45 628 NAT9,SLC9A3R1,RAB37,TMEM104,MIR3615,CD300LF
SE_02_011500223 chr17:74765664-74778764 Sample_02_0115 Mammary gland MCF-7 223 1 449 44 2 71 1415 NAT9,SLC9A3R1,TMEM104,RAB37,MIR3615
Genomic distribution of SEs associated with NAT9
Genome Browser

The strength of the tissue affected by the gene

Expression of NAT9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)