SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000187556
Gene: NANOS3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:13862063-13880757 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098500076 chr19:13842257-13866389 Sample_02_0985 Brain H3.3K27M-DIPGXIII-C14 76 6 612 38 0 122 0 NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A
SE_02_006600509 chr19:13845669-13852289 Sample_02_0066 Embryo AzL-S_phase 509 2 172 17 0 69 0 MIR181C,MIR23A,MIR27A,MIR24-2,MIR181D,NANOS3,LOC284454
SE_02_044600127 chr19:13878917-13889335 Sample_02_0446 Bone osteosarcoma tumor P2 127 1 362 40 0 11 657 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_044700554 chr19:13879418-13900969 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 554 8 685 66 0 19 1225 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_024200446 chr19:13879919-13896292 Sample_02_0242 Colon V481 446 1 553 55 0 19 1225 NANOS3,C19ORF57,MIR181C,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,CC2D1A,LOC284454
SE_02_047800575 chr19:13880333-13890514 Sample_02_0478 Colon normal colon mucosa 575 1 359 39 0 15 932 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_136300506 chr19:13880372-13900539 Sample_02_1363 Blood Hudep2 506 6 638 64 0 19 1185 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_123900227 chr19:13880497-13889224 Sample_02_1239 Skin Waga_virus_positive 227 2 297 36 0 6 578 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_087100288 chr19:13881280-13890474 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 288 3 322 37 0 15 781 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
SE_02_123700568 chr19:13882570-13889777 Sample_02_1237 Skin MKL2_virus_positive 568 1 246 29 0 9 503 C19ORF57,NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,PODNL1,MIR181C,CC2D1A
Genomic distribution of SEs associated with NANOS3
Genome Browser

The strength of the tissue affected by the gene

Expression of NANOS3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)