SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000133606
Gene: MKRN1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:140453033-140479536 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_012400801 chr7:140432187-140459474 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 801 4 744 81 1 100 502 MKRN1,RAB19,SLC37A3
SE_02_101700524 chr7:140435207-140526718 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 524 18 2767 190 4 182 1463 MKRN1,DENND2A,RAB19,SLC37A3
SE_02_104901262 chr7:140440286-140489567 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1262 26 1492 136 0 146 969 MKRN1,RAB19,SLC37A3
SE_02_025700179 chr7:140443887-140526793 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 179 15 2537 162 3 182 1463 MKRN1,DENND2A,RAB19,SLC37A3
SE_02_156700952 chr7:140447399-140458629 Sample_02_1567 iPSCs CiPSC 952 4 307 26 0 96 443 MKRN1,RAB19,SLC37A3
SE_02_003600919 chr7:140447525-140457625 Sample_02_0036 Embryo H7 919 3 282 23 0 96 443 MKRN1,RAB19,SLC37A3
SE_00_001200560 chr7:140447638-140457133 Sample_00_0012 Embryo H1-hESC 560 3 275 22 0 96 443 MKRN1,RAB19,SLC37A3
SE_02_103500451 chr7:140463649-140521133 Sample_02_1035 Mammary gland HCC70_Vehicle 451 23 1803 94 1 58 616 MKRN1,DENND2A
SE_02_075200140 chr7:140470454-140508213 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 140 6 1147 54 0 38 405 MKRN1
SE_02_051700819 chr7:140474881-140493257 Sample_02_0517 Esophagus TE5 819 9 564 35 0 30 207 MKRN1
SE_02_101600905 chr7:140475099-140520135 Sample_02_1016 Embryo H9_Mesendoderm_24h 905 8 1380 53 1 53 411 MKRN1,DENND2A
SE_04_000200461 chr7:140475251-140512951 Sample_04_0002 Blood cold shocked K562 461 8 1120 40 0 38 200 MKRN1,DENND2A
SE_02_012400331 chr7:140475329-140494183 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 331 2 574 33 0 30 200 MKRN1
SE_01_010900607 chr7:140476010-140520506 Sample_01_0109 Colon transverse colon_54y 607 13 1368 51 1 53 411 MKRN1,DENND2A
SE_02_075600065 chr7:140476123-140518673 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 65 11 1296 45 1 47 290 MKRN1,DENND2A
SE_02_068701130 chr7:140476192-140513470 Sample_02_0687 Lung NCI-H146_no infection 1130 8 1121 37 0 38 200 MKRN1
SE_02_047800356 chr7:140476203-140520471 Sample_02_0478 Colon normal colon mucosa 356 17 1360 51 1 53 411 MKRN1,DENND2A
SE_04_000100570 chr7:140476229-140512612 Sample_04_0001 Blood heat shocked K562 570 6 1081 37 0 33 200 MKRN1,DENND2A
SE_02_003800388 chr7:140476454-140522285 Sample_02_0038 Embryo DE 388 8 1412 54 1 62 521 MKRN1,DENND2A
SE_02_074500071 chr7:140476626-140542902 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 71 13 2050 117 5 90 806 MKRN1,DENND2A
SE_02_075500096 chr7:140476640-140522050 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 96 7 1401 54 1 62 479 MKRN1,DENND2A
SE_02_047700412 chr7:140476678-140526159 Sample_02_0477 Colon intestinal epithelial organoids_139a 412 17 1506 62 3 66 694 MKRN1,DENND2A
SE_02_004300124 chr7:140476683-140519393 Sample_02_0043 Embryo endodermal CyT49_ES_D2 124 13 1311 49 1 49 342 MKRN1,DENND2A
SE_02_081601560 chr7:140476766-140502195 Sample_02_0816 Ovary Clear cell ovarian cancer 1560 15 742 33 0 30 200 MKRN1
SE_02_113000478 chr7:140476766-140512729 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 478 9 1073 37 0 33 200 MKRN1,DENND2A
SE_02_075300514 chr7:140477068-140507570 Sample_02_0753 Embryo ES-derived progenitors_FG type 514 6 911 34 0 33 200 MKRN1
SE_02_063000279 chr7:140477377-140519813 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 279 8 1297 49 1 51 400 MKRN1,DENND2A
SE_02_155300964 chr7:140477408-140520189 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 964 11 1309 49 1 53 411 MKRN1,DENND2A
SE_02_064502052 chr7:140477422-140479927 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2052 1 73 6 0 30 200 MKRN1
SE_02_003601426 chr7:140477923-140493368 Sample_02_0036 Embryo H7 1426 5 466 28 0 30 200 MKRN1
SE_00_002400349 chr7:140477998-140519868 Sample_00_0024 Embryo mesendoderm 349 9 1284 48 1 51 406 MKRN1,DENND2A
SE_00_003500738 chr7:140478275-140520044 Sample_00_0035 Sigmoid colon sigmoid-colon 738 8 1285 47 1 53 411 MKRN1,DENND2A
SE_02_077501221 chr7:140491819-140542843 Sample_02_0775 Pancreas EndoC-BH1_SE 1221 19 1595 86 5 60 606 DENND2A,MKRN1
SE_02_074600679 chr7:140493345-140512875 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 679 4 576 7 0 5 0 MKRN1
SE_02_104601527 chr7:140495682-140547056 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1527 10 1584 94 5 77 927 DENND2A,MKRN1
SE_02_001600683 chr7:140501123-140518386 Sample_02_0016 Blood erythroblasts 683 4 548 10 1 17 32 MKRN1
SE_02_101800349 chr7:140502216-140518389 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 349 6 519 10 1 17 32 MKRN1
SE_02_074400284 chr7:140502255-140520041 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 284 6 587 17 1 23 211 DENND2A,MKRN1
SE_01_007400344 chr7:140505788-140573209 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 344 7 2105 159 5 116 1378 DENND2A,MKRN1
SE_01_008300343 chr7:140505867-140572871 Sample_01_0083 Sigmoid colon sigmoid-colon 343 8 2092 158 5 116 1378 DENND2A,MKRN1
SE_02_129200788 chr7:140505935-140512921 Sample_02_1292 Lung JHU-LX110-SCLC PDX 788 5 211 3 0 5 0 MKRN1
SE_01_007700401 chr7:140505977-140572759 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 401 10 2085 158 5 116 1378 DENND2A,MKRN1
SE_02_004000818 chr7:140506234-140543366 Sample_02_0040 Embryo PFG 818 5 1175 85 5 57 606 DENND2A,MKRN1
SE_02_153901059 chr7:140506420-140543610 Sample_02_1539 Nasopharyngeal C666-1 1059 12 1179 85 5 57 633 DENND2A,MKRN1
SE_02_103900459 chr7:140510799-140526642 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 459 7 503 31 3 33 494 DENND2A,MKRN1
SE_02_040700396 chr7:140517560-140543903 Sample_02_0407 Brain BT16 396 4 849 78 4 50 673 DENND2A,MKRN1
SE_02_103100540 chr7:140519930-140556456 Sample_02_1031 Head and neck SCC1 contol 540 13 1113 87 4 60 800 DENND2A,MKRN1
SE_02_004600642 chr7:140539579-140543353 Sample_02_0046 Embryo endodermal CyT49_ES_D10 642 2 138 16 0 4 0 DENND2A,MKRN1
SE_02_004500924 chr7:140539807-140543275 Sample_02_0045 Embryo endodermal CyT49_ES_D7 924 2 126 14 0 4 0 DENND2A,MKRN1
SE_02_012400327 chr7:140539972-140565926 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 327 4 796 63 0 46 558 DENND2A,MKRN1
SE_02_049401103 chr7:140540054-140543454 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1103 1 116 11 0 4 8 DENND2A,MKRN1
Genomic distribution of SEs associated with MKRN1
Genome Browser

The strength of the tissue affected by the gene

Expression of MKRN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)